View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_44 (Length: 250)
Name: NF0226_low_44
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_44
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 31638699 - 31638920
Alignment:
Q
29
atatcattgggatcttccacagatgctggaagataaatatgaaggatggttaagtacacaaataatgtaagttacttcaatgctatatacttatatagca
128
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31638699
atatcattgggatcttccacagatgctggaagataaatatgaaggatggttaagtacacaaataatgtaagttacttcaatgctatatacttatatagca
31638798
T
Q
129
tgcatagtatcaacatttctgattgaatgcgtatctaggtatcggacacatcaacacgacaccgacatatgcgattatattcaaattaattcattttctc
228
Q
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31638799
tgcataatatcaacatttctgattgaatgcgtatctaggtatcggacacatcaacacgacaccgacatatgcgattatattcaaattaattcattttctc
31638898
T
Q
229
aagttattatcggttttctcat
250
Q
||||||||||||||||||||||
T
31638899
aagttattatcggttttctcat
31638920
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 46179910 - 46179963
Alignment:
Q
185
cgacaccgacatatgcgattatattcaaattaattcattttctcaagttattatc
239
Q
||||||||||| ||| |||||||||| |||||||| |||||||||| ||||||||
T
46179910
cgacaccgacacatgtgattatattc-aattaatttattttctcaacttattatc
46179963
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 34625785 - 34625737
Alignment:
Q
193
acatatgcgattatattcaaattaattcattttctcaagttattatcggt
242
Q
||||||| ||||| |||||| ||||||||||||||||| |||||||||||
T
34625785
acatatgtgattacattcaa-ttaattcattttctcaaattattatcggt
34625737
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 41226745 - 41226792
Alignment:
Q
196
tatgcgattatattcaaattaattcattttctcaagttattatcggttt
244
Q
|||| |||||||||||||| | ||||||||||||| |||||||||||||
T
41226745
tatgtgattatattcaaat-agttcattttctcaaattattatcggttt
41226792
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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