View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_45 (Length: 248)
Name: NF0226_low_45
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_45
Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 5563700 - 5563629
Alignment:
Q
30
gaaagatggttgtgaatgaggtgaggaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc
101
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5563700
gaaagatggttgtgaatgaggtgaggaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc
5563629
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 5563566 - 5563480
Alignment:
Q
163
taagaaattaactaaaaagtatgtnnnnnnnn-gaaatagaaagtactttccttggttgttgatgcaagatcctgagtgcagagaaa
248
Q
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
T
5563566
taagaaattaactaaaaagtatgtaaaaaaaaagaaatagaaagtactttccttgtttgttgaagcaagatcctgagtgcagagaaa
5563480
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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