View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_47 (Length: 245)

Name: NF0226_low_47
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_47
NF0226_low_47
[»] chr2 (10 HSPs)
chr2 (24-175)||(6915171-6915322)
chr2 (35-91)||(10492777-10492833)
chr2 (34-86)||(28105350-28105402)
chr2 (28-91)||(10463585-10463648)
chr2 (28-75)||(10507349-10507396)
chr2 (40-91)||(10860707-10860758)
chr2 (29-91)||(10474161-10474223)
chr2 (35-91)||(7476566-7476622)
chr2 (40-91)||(10848803-10848854)
chr2 (34-91)||(7478731-7478788)
[»] chr4 (3 HSPs)
chr4 (183-245)||(3762512-3762574)
chr4 (189-245)||(3776599-3776655)
chr4 (189-245)||(3745722-3745778)
[»] chr7 (2 HSPs)
chr7 (24-95)||(15045570-15045641)
chr7 (122-175)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (39-90)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q  24 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  124 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 175  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  35 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  34 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 86  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  28 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  28 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 75  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  40 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  29 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  35 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  40 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  34 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 91  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 3762512 - 3762574
Alignment:
Q  183 cactgtcaccaacaacaggcatctccctacccttattaagagctggattcctccccaagatag 245  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatag 3762574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 3776599 - 3776655
Alignment:
Q  189 caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatag 245  Q
    |||||||||||||||| |||||| |||||||| ||||  ||||||||||||||||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatag 3776655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 3745722 - 3745778
Alignment:
Q  189 caccaacaacaggcatctccctacccttattaagagctggattcctccccaagatag 245  Q
    ||||||||| |||||| |||||| ||||||||||||| | ||| |||||||||||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatag 3745778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  24 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 95  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  122 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 175  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  39 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 90  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University