View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_48 (Length: 241)

Name: NF0226_low_48
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_48
NF0226_low_48
[»] chr3 (1 HSPs)
chr3 (25-191)||(1182024-1182193)
[»] chr7 (5 HSPs)
chr7 (50-191)||(8035221-8035366)
chr7 (50-191)||(38111126-38111271)
chr7 (50-191)||(45034130-45034275)
chr7 (50-191)||(46045417-46045562)
chr7 (51-145)||(19303982-19304080)
[»] chr5 (2 HSPs)
chr5 (50-191)||(32385998-32386143)
chr5 (50-191)||(14024445-14024590)
[»] chr8 (3 HSPs)
chr8 (50-191)||(41999794-41999939)
chr8 (50-191)||(45092951-45093096)
chr8 (50-191)||(9215733-9215878)
[»] chr4 (3 HSPs)
chr4 (50-191)||(28945820-28945965)
chr4 (50-191)||(1368944-1369089)
chr4 (50-158)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (50-191)||(11996187-11996332)
chr2 (51-191)||(24126868-24127012)
chr2 (50-191)||(42865427-42865572)
[»] chr1 (1 HSPs)
chr1 (50-191)||(6293526-6293671)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 1182193 - 1182024
Alignment:
Q  25 gtatatagtttccttttgatgaggacttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaataga 121  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  1182193 gtatatagtttccttttgatgaggacttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttcaaaataga 1182094  T
Q  122 tttgtttcaccaattccacaaatactagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    |||||||||||||||||| |||||||||||||||||| |||||||  ||| | ||||| ||| |||||||    
T  1182093 tttgtttcaccaattccataaatactagcatgttgtcatgaaagtcatatactaagtagcaggattatct 1182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 8035366 - 8035221
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  8035366 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 8035267  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  8035266 ccaacatgttgtcatgaaagtagtctgccaagtagcagaattatct 8035221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 38111126 - 38111271
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  38111126 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 38111225  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  38111226 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 38111271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 45034130 - 45034275
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  45034130 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata 45034229  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | |||||| || ||||||| || ||||||||| ||| |||||||    
T  45034230 ccaacatgttatcatgaaagtagtctgccaagtagcaggattatct 45034275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 46045562 - 46045417
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  46045562 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 46045463  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  46045462 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 46045417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 19303982 - 19304080
Alignment:
Q  51 ttctatctctctagtaaacttttgaattaccag---tgaattgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||| ||||  ||||||||||||||||| ||   || |||| | |||| |||||||| |||||||||| |||||||||| | |||||||||||||||    
T  19303982 ttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtctttgaaatcctatttcaaaaatagatttgttccgccaattccacaaata 19304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 32386143 - 32385998
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  32386143 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 32386044  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  32386043 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 32385998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 14024590 - 14024445
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  14024590 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 14024491  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  14024490 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 14024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 41999939 - 41999794
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  41999939 cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 41999840  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  41999839 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 41999794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 45093096 - 45092951
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    ||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  45093096 cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 45092997  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||| | || ||||||||| ||| |||||||    
T  45092996 ccaacatgttgtcgtgaaattagtctgccaagtagcaggattatct 45092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 9215878 - 9215733
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||| ||||||||||| |||||||    ||||||| ||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  9215878 cttctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaata 9215779  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | |||||| |||| ||||||| || | ||||||| ||| |||||||    
T  9215778 ccagcatgatgtcatgaaagtagtctcccaagtagcaggattatct 9215733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 28945820 - 28945965
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  28945820 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 28945919  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  28945920 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 28945965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 1369089 - 1368944
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  1369089 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 1368990  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  1368989 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 1368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 36859260 - 36859372
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttc-aaaatagatttgtttcaccaattccacaaata 145  Q
    ||||||| ||||||||||||||||||||||| |||||   |||||| |||| |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  36859260 cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata 36859359  T
Q  146 ctagcatgttgtc 158  Q
      | |||||||||    
T  36859360 tcaacatgttgtc 36859372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 11996187 - 11996332
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  11996187 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata 11996286  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  11996287 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 11996332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 24126868 - 24127012
Alignment:
Q  51 ttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac 146  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  24126868 ttctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaatac 24126967  T
Q  147 tagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
     | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  24126968 caacatgttgtcatgaaagtagtctgccaagtagcaggattatct 24127012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 42865572 - 42865427
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  42865572 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 42865473  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  42865472 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 42865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 6293671 - 6293526
Alignment:
Q  50 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 145  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||| || |||||    
T  6293671 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata 6293572  T
Q  146 ctagcatgttgtcctgaaagttgtatgccaagtatcagtattatct 191  Q
    | | ||||||||| ||||||| || ||||||||| ||| |||||||    
T  6293571 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 6293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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