View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_5 (Length: 473)

Name: NF0226_low_5
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_5
NF0226_low_5
[»] chr6 (2 HSPs)
chr6 (105-459)||(31376712-31377066)
chr6 (254-339)||(31385071-31385156)
[»] chr1 (14 HSPs)
chr1 (254-459)||(30366877-30367083)
chr1 (28-235)||(30366504-30366711)
chr1 (254-368)||(30365038-30365152)
chr1 (254-366)||(13205766-13205878)
chr1 (254-412)||(13162785-13162945)
chr1 (254-367)||(13102456-13102571)
chr1 (254-362)||(13136359-13136469)
chr1 (163-228)||(13008929-13008994)
chr1 (254-401)||(13131103-13131252)
chr1 (254-412)||(13008449-13008611)
chr1 (253-291)||(13067030-13067068)
chr1 (160-228)||(13006452-13006527)
chr1 (163-228)||(13068593-13068658)
chr1 (176-216)||(13071066-13071106)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 105 - 459
Target Start/End: Complemental strand, 31377066 - 31376712
Alignment:
Q  105 tgatataaagtatgatcaatttctgatcactacaattgtcaaatatcaatggtttctctggcatgtgattatgacaggaggattaagaagatagagttca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31377066 tgatataaagtatgatcaatttctgatcactacaattgtcaaatgtcaatggtttctctggcatgtgattgtgacaggaggattaagaagatagagttca 31376967  T
Q  205 cacctttttgaggcaatatatttaggaataaaggaagaaaggaagtcaatataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacaca 304  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31376966 cacctttttgaggcattatatttaggaataaaggaagaaaggaagtcaatataaaagtgtaaagcatttacacatttcataagcataaatttaaaacaca 31376867  T
Q  305 tgcaatttgaaacacacctaaagtaaatctacaatgtttatgattcaatgtattggaggatttgcagctatcctcttcgtcatttacatctactattggc 404  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31376866 tgcaatttgaaacatacctaaagtaaatctacaatgtttatgattcaatgtattggaggatttgcagctatcctcttcgtcatttacatctactattggc 31376767  T
Q  405 gacacaatggtggtgagattatgatgaattggccaatagttggtatgctactgtc 459  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31376766 gacacaatggcggtgagattatgatgaattggccaatagttggtatgctactgtc 31376712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 339
Target Start/End: Original strand, 31385071 - 31385156
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttgaaacacacctaaagtaaatctacaat 339  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||  || | ||||||||||  ||||| |||||||||||| |||||||    
T  31385071 tataaaagtataaagcatgtacatattttataagcatacatcaaacaaacatgcaattcaaaacatacctaaagtaaacctacaat 31385156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 254 - 459
Target Start/End: Original strand, 30366877 - 30367083
Alignment:
Q  254 tataaaagtgtaaa-gcatgtacacatttcataagcataaatttaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtttatgattcaa 352  Q
    |||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30366877 tataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtgtatgattcaa 30366976  T
Q  353 tgtattggaggatttgcagctatcctcttcgtcatttacatctactattggcgacacaatggtggtgagattatgatgaattggccaatagttggtatgc 452  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  30366977 tgtattggaggatttgtagctatcctcttcttcatttacatctactataggcgacacaatggcggtgagattatgccgaattggccaatagttggtatgc 30367076  T
Q  453 tactgtc 459  Q
    || ||||    
T  30367077 tattgtc 30367083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 30366504 - 30366711
Alignment:
Q  28 cacttgaaccaatattgtctaggaaatttattagtaatacttgtttgggacgattcaaccaaatttcaaggagagcgtgatataaagtatgatcaatttc 127  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||| ||||||| |||| ||||||| ||    
T  30366504 cacttgaaccaatattgtctaggaaatttattagcaatacttgtttgggatgattcaaccaaatttgatggagagcttgatatagagtaggatcaatctc 30366603  T
Q  128 tgatcactacaattgtcaaatatcaatggtttctctggcatgtgattatgacaggaggattaagaagatagagttcacacctttttgaggcaatatattt 227  Q
    ||| |||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30366604 tgagcacttcaattgtcaaatgtcattggtttctctggcatgtgattgtgacaggaggattaagaagatagtgttcacacctttttgaggcaatatattt 30366703  T
Q  228 aggaataa 235  Q
    ||||||||    
T  30366704 aggaataa 30366711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 254 - 368
Target Start/End: Original strand, 30365038 - 30365152
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtttatgattcaat 353  Q
    ||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||||  ||||||||||    
T  30365038 tataaaagtgtaaagtatgtacacattttataagcatacattaaaaacacatgcaattcgaaacatacctaaattaaatctacaatgtgcatgattcaat 30365137  T
Q  354 gtattggaggatttg 368  Q
    ||||||||| |||||    
T  30365138 gtattggagaatttg 30365152  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 366
Target Start/End: Complemental strand, 13205878 - 13205766
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttg-aaacacacctaaagtaaatctacaatgtttatgattcaa 352  Q
    |||| ||||||||||||||||||||||| ||||||||  ||  ||||||||||||||||| ||||||| ||  ||||||||||||||||  || |||||     
T  13205878 tatataagtgtaaagcatgtacacattttataagcatgcatgaaaaacacatgcaatttgaaaacaca-ctttagtaaatctacaatgtcaataattcag 13205780  T
Q  353 tgtattggaggatt 366  Q
    ||||||||||||||    
T  13205779 tgtattggaggatt 13205766  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 13162945 - 13162785
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttg-aaacacac-ctaaagtaaatctacaatgtttatgattca 351  Q
    |||| ||||||||||||||||||||||| | ||||||  ||  ||||||||||||||||| |||||||| ||  |||||||||| |||||  || |||||    
T  13162945 tatataagtgtaaagcatgtacacattttaaaagcatgcatgaaaaacacatgcaatttgaaaacacacactttagtaaatctataatgtcaataattca 13162846  T
Q  352 atgtattggaggatttgcagctatcctcttcgtcatttacatctactattggcgacacaat 412  Q
     |||||||||||||||| ||| |||||  || || | ||||| ||||||||| ||| ||||    
T  13162845 gtgtattggaggatttgtagccatcctaatcttcctatacatttactattggagacgcaat 13162785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 367
Target Start/End: Complemental strand, 13102571 - 13102456
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaattt-gaaacaca-cctaaagtaaatctacaatgtttatgattca 351  Q
    |||| ||||||||||||||||||||||| ||||||||  ||  || |||||||||||||  ||||| | |||  ||||||||| |||||| ||| |||||    
T  13102571 tatataagtgtaaagcatgtacacattttataagcatgcatgaaagacacatgcaatttataaacataccctttagtaaatcttcaatgtctataattca 13102472  T
Q  352 atgtattggaggattt 367  Q
     |||||||||||||||    
T  13102471 gtgtattggaggattt 13102456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 13136359 - 13136469
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttg-aaacacac-ctaaagtaaatctacaatgtttatgattca 351  Q
    |||| ||||||||||||||||||||||| ||||||||  ||  ||||||||| ||||||| |||||||| ||  ||||||||||||||||  || |||||    
T  13136359 tatataagtgtaaagcatgtacacattttataagcatgcatgaaaaacacattcaatttgaaaacacacactttagtaaatctacaatgtcaataattca 13136458  T
Q  352 atgtattggag 362  Q
     ||| ||||||    
T  13136459 gtgtcttggag 13136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 13008994 - 13008929
Alignment:
Q  163 tggcatgtgattatgacaggaggattaagaagatagagttcacacctttttgaggcaatatattta 228  Q
    |||||||||| | || |||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  13008994 tggcatgtgactgtggcaggaatattaagaagatagtgttcacacctttttgaggcaagatattta 13008929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 401
Target Start/End: Complemental strand, 13131252 - 13131103
Alignment:
Q  254 tataaaagtgtaaagcatgtacacatttcataagcataaatttaaaacacatgcaatttg-aaacacac-ctaaagtaaatctacaatgtttatgattca 351  Q
    |||| ||||||||| ||||||||||||| ||||||||  ||  || |||||||||||||| ||||| || ||  |||||| |||||||||  || |||||    
T  13131252 tatataagtgtaaaccatgtacacattttataagcatgcatgaaagacacatgcaatttgcaaacatacactttagtaaaactacaatgtcaataattca 13131153  T
Q  352 atgtattggaggatttgcagctatcctcttcgtcatttacatctactatt 401  Q
     |||||||||||||||| | | |||||  || || | |||||||||||||    
T  13131152 gtgtattggaggatttgtaaccatcctaatcttcctatacatctactatt 13131103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 13008611 - 13008449
Alignment:
Q  254 tataaaagtgtaaagcat--gtacacatttcataagcataaatttaaaacacatgcaatttgaaa-cacac-ctaaagtaaatctacaatgtttatgatt 349  Q
    |||| |||||||||||||  ||||||| || ||| ||||  ||  || ||||||||||||||||| ||||  ||  ||||||||||||||||  || |||    
T  13008611 tatataagtgtaaagcatatgtacacaatttatatgcatgcatcaaagacacatgcaatttgaaaacacatactttagtaaatctacaatgtccataatt 13008512  T
Q  350 caatgtattggaggatttgcagctatcctcttcgtcatttacatctactattggcgacacaat 412  Q
    || |||||||||||||||| ||| |||||  || || | ||||||||||||||| ||| ||||    
T  13008511 cagtgtattggaggatttgtagccatcctaatcttcctatacatctactattggagacgcaat 13008449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 13067030 - 13067068
Alignment:
Q  253 atataaaagtgtaaagcatgtacacatttcataagcata 291  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  13067030 atataaaattgtaaagcatgtacacattttataagcata 13067068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 13006527 - 13006452
Alignment:
Q  160 ctctggcatgtgattatgacaggaggattaagaagat-------agagttcacacctttttgaggcaatatattta 228  Q
    ||||||||||||| | |||||||| ||||||||||||       ||| |||| |||||||||||||||||||||||    
T  13006527 ctctggcatgtgactgtgacaggaagattaagaagatagtgttcagacttcagacctttttgaggcaatatattta 13006452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 13068593 - 13068658
Alignment:
Q  163 tggcatgtgattatgacaggaggattaagaagatagagttcacacctttttgaggcaatatattta 228  Q
    |||||||||| | ||||| || |||||||| ||||  ||| ||||||| |||||||||||||||||    
T  13068593 tggcatgtgactgtgacaagaagattaagatgataatgtttacaccttcttgaggcaatatattta 13068658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 13071066 - 13071106
Alignment:
Q  176 tgacaggaggattaagaagatagagttcacacctttttgag 216  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  13071066 tgacaggaagattaagaagatagtgttcacacttttttgag 13071106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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