View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_52 (Length: 216)
Name: NF0226_low_52
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_52
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q
28
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
127
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6915322
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
6915223
T
Q
128
atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
179
Q
||| ||||||||||||||||||||||||||||||||||||||||||| ||||
T
6915222
atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct
6915171
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q
39
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||
T
10492777
gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct
10492833
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q
38
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa
90
Q
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||||
T
28105402
agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa
28105350
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q
32
tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
||||| ||||||||||||||| | |||||||||||||||||||| || || ||||||||||||
T
10463585
tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct
10463648
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q
32
tttgacagcactacccatgaataccggtataaatttccgtgctatggt
79
Q
||||| |||||| ||||||||||| |||||||||||||||||||||||
T
10507349
tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt
10507396
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q
44
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||
T
10860707
acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct
10860758
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q
33
ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||| |||||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||
T
10474161
ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct
10474223
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q
39
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||
T
7476622
gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct
7476566
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q
44
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||||||||||| ||||||||||| |||||||||| |||||||||| ||||
T
10848803
acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct
10848854
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q
38
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
95
Q
|||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||
T
7478788
agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct
7478731
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q
28
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct
99
Q
||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||
T
15045570
tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct
15045641
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q
126
tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
179
Q
||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||
T
15047553
tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct
15047606
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q
43
tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc
94
Q
|||||||||| | |||| |||||||||||||||||| ||||||||||||||
T
44307022
tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc
44307073
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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