View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_53 (Length: 216)
Name: NF0226_low_53
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_53
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q
52
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
151
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6915322
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
6915223
T
Q
152
atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
203
Q
||| ||||||||||||||||||||||||||||||||||||||||||| ||||
T
6915222
atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct
6915171
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q
63
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||
T
10492777
gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct
10492833
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q
62
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa
114
Q
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||||
T
28105402
agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa
28105350
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q
56
tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
||||| ||||||||||||||| | |||||||||||||||||||| || || ||||||||||||
T
10463585
tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct
10463648
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q
56
tttgacagcactacccatgaataccggtataaatttccgtgctatggt
103
Q
||||| |||||| ||||||||||| |||||||||||||||||||||||
T
10507349
tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt
10507396
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q
68
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||
T
10860707
acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct
10860758
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q
57
ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||| |||||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||
T
10474161
ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct
10474223
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q
63
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||
T
7476622
gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct
7476566
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q
68
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||||||||||| ||||||||||| |||||||||| |||||||||| ||||
T
10848803
acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct
10848854
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q
62
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
119
Q
|||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||
T
7478788
agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct
7478731
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q
52
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct
123
Q
||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||
T
15045570
tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct
15045641
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q
150
tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
203
Q
||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||
T
15047553
tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct
15047606
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q
67
tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc
118
Q
|||||||||| | |||| |||||||||||||||||| ||||||||||||||
T
44307022
tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc
44307073
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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