View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_53 (Length: 216)

Name: NF0226_low_53
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_53
NF0226_low_53
[»] chr2 (10 HSPs)
chr2 (52-203)||(6915171-6915322)
chr2 (63-119)||(10492777-10492833)
chr2 (62-114)||(28105350-28105402)
chr2 (56-119)||(10463585-10463648)
chr2 (56-103)||(10507349-10507396)
chr2 (68-119)||(10860707-10860758)
chr2 (57-119)||(10474161-10474223)
chr2 (63-119)||(7476566-7476622)
chr2 (68-119)||(10848803-10848854)
chr2 (62-119)||(7478731-7478788)
[»] chr7 (2 HSPs)
chr7 (52-123)||(15045570-15045641)
chr7 (150-203)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (67-118)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q  52 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  152 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 203  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  63 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  62 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 114  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  56 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  56 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 103  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  68 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  57 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  63 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  68 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  62 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 119  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  52 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 123  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  150 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 203  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  67 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 118  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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