View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_56 (Length: 210)

Name: NF0226_low_56
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_56
NF0226_low_56
[»] chr2 (10 HSPs)
chr2 (42-192)||(6915171-6915322)
chr2 (125-181)||(10492777-10492833)
chr2 (130-182)||(28105350-28105402)
chr2 (125-188)||(10463585-10463648)
chr2 (141-188)||(10507349-10507396)
chr2 (125-176)||(10860707-10860758)
chr2 (125-187)||(10474161-10474223)
chr2 (125-181)||(7476566-7476622)
chr2 (125-176)||(10848803-10848854)
chr2 (125-182)||(7478731-7478788)
[»] chr7 (2 HSPs)
chr7 (121-192)||(15045570-15045641)
chr7 (42-86)||(15047562-15047606)
[»] chr8 (1 HSPs)
chr8 (126-177)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (1-33)||(42010328-42010360)
[»] chr3 (1 HSPs)
chr3 (1-33)||(1245666-1245698)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 6915171 - 6915322
Alignment:
Q  42 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttct-agcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  141 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 6915322  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 181  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  130 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 182  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 188  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  141 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 188  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 176  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 187  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 181  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 176  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  125 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 182  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  121 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 192  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 15047606 - 15047562
Alignment:
Q  42 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttct 86  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttct 15047562  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  126 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 177  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42010360 - 42010328
Alignment:
Q  1 cattggtgtttcagccaatactcgtgccacagt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42010360 cattggtgtttcagccaatactcgagccacagt 42010328  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1245698 - 1245666
Alignment:
Q  1 cattggtgtttcagccaatactcgtgccacagt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1245698 cattggtgtttcagccaatactcgagccacagt 1245666  T

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