View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_58 (Length: 202)

Name: NF0226_low_58
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_58
NF0226_low_58
[»] chr3 (11 HSPs)
chr3 (1-99)||(23036237-23036335)
chr3 (1-99)||(23039108-23039206)
chr3 (12-99)||(23032777-23032864)
chr3 (1-99)||(23017129-23017227)
chr3 (1-99)||(23145987-23146085)
chr3 (1-99)||(23148825-23148923)
chr3 (1-64)||(23024339-23024402)
chr3 (1-64)||(23140113-23140176)
chr3 (18-99)||(22946488-22946569)
chr3 (18-99)||(22972035-22972116)
chr3 (6-64)||(22941444-22941502)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-99)||(6589-6687)
[»] chr6 (1 HSPs)
chr6 (1-99)||(21779880-21779978)
[»] chr1 (3 HSPs)
chr1 (1-64)||(12609972-12610035)
chr1 (1-64)||(15885832-15885895)
chr1 (1-79)||(12637068-12637146)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-64)||(62220-62283)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 4e-49; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23036237 - 23036335
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036237 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 23036335  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23039108 - 23039206
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||    
T  23039108 tctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataac 23039206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 23032777 - 23032864
Alignment:
Q  12 aatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | | |||||||| ||||| |||||||||||||    
T  23032777 aatctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataac 23032864  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23017129 - 23017227
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| ||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||| ||| | |||||| ||||||  |||||||||||||    
T  23017129 tctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataac 23017227  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23145987 - 23146085
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| | |   |||||| ||||||| |||||||||||||    
T  23145987 tctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataac 23146085  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23148825 - 23148923
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| | || ||| ||||||| || ||||||||||    
T  23148825 tctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataac 23148923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23024339 - 23024402
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23024339 tctctggataaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcatt 23024402  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23140113 - 23140176
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| || |||||||| |||||    
T  23140113 tctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgcatt 23140176  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 22946488 - 22946569
Alignment:
Q  18 tctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    ||||| |||||||| || |||||||| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||    
T  22946488 tctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataac 22946569  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 22972035 - 22972116
Alignment:
Q  18 tctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    ||||| |||||||| || |||||||| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||    
T  22972035 tctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataac 22972116  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 22941502 - 22941444
Alignment:
Q  6 ggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    ||||||||||||||||| |||  ||| | ||||||||||||| |||| |||||||||||    
T  22941502 ggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcatt 22941444  T

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Target: scaffold0554 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6687 - 6589
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||| | ||||||||| |||  ||||||| |||||    
T  6687 tctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataac 6589  T

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Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21779880 - 21779978
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataac 99  Q
    |||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||| ||||||| || ||||| ||||    
T  21779880 tctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaac 21779978  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12609972 - 12610035
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    |||| ||||||||  ||||||||||||||||||| |||||||||||| |||| ||||| |||||    
T  12609972 tctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcatt 12610035  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15885895 - 15885832
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    |||| |||||||| ||||||||||||||||| || |||||||||||| |||| ||||| |||||    
T  15885895 tctctggataaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcatt 15885832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12637068 - 12637146
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttact 79  Q
    |||| |||| ||| |||||||||||||||||||| |||||||||||  |||||| ||| ||||||| | | ||||||||    
T  12637068 tctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttact 12637146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 62220 - 62283
Alignment:
Q  1 tctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 64  Q
    |||| |||||||| ||||||||||| ||||||||  ||||||||||| | |||||||| |||||    
T  62220 tctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcatt 62283  T

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