View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_59 (Length: 202)
Name: NF0226_low_59
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_59
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39864194 - 39864315
Alignment:
Q
1
gcatcacatcgactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagc
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
39864194
gcatcacatcgactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagc
39864293
T
Q
101
ggaaatgcttctcgttattcat
122
Q
||||||| ||||| ||||||||
T
39864294
ggaaatgtttctctttattcat
39864315
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 39737259 - 39737156
Alignment:
Q
15
aaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcggaaatgcttctcg
114
Q
||||||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||| || ||||||| ||||||| |||||||||||||| ||||||
T
39737259
aaactaatttcctttaaataaacctcaaaaagaaaatacctggcgattgtgcacatatttcatgtatgaaggcacatcgggatagcggaaatgtttctcg
39737160
T
Q
115
ttat
118
Q
||||
T
39737159
ttat
39737156
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 37465374 - 37465462
Alignment:
Q
15
aaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcgga
103
Q
|||| |||||||||||||||| | |||||| | |||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||
T
37465374
aaacaaattgcctttaattaatcctcaaaaggaaaatacctggcgattgtgcacgtattccaagtaagaaggcacatcaggatagcgga
37465462
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 39897587 - 39897675
Alignment:
Q
11
gactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatag
99
Q
|||||||| ||||| ||| |||||||| ||||| | ||||||| || ||||||||||||||||||||||||| ||||||||||||||
T
39897587
gactaaacaaattgacttcaattaaaccgcaaaaggaaaataccagggtattgtgcacatattccaagtatgaaggcacatcaggatag
39897675
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 39847043 - 39847116
Alignment:
Q
39
tcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcggaaatgcttct
112
Q
|||||||| |||||||||| |||||| ||||||||||| ||||||| | |||| ||||||||||| ||| ||||
T
39847043
tcaaaaagaaaatacctggcgattgtacacatattccatgtatgaaagaacattaggatagcggatatgtttct
39847116
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 39910442 - 39910474
Alignment:
Q
61
ttgtgcacatattccaagtatgaacgcacatca
93
Q
||||||||||||||||||||||||| |||||||
T
39910442
ttgtgcacatattccaagtatgaacacacatca
39910474
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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