View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_59 (Length: 202)
Name: NF0226_low_59
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39864194 - 39864315
Alignment:
| Q |
1 |
gcatcacatcgactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagc |
100 |
Q |
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| T |
39864194 |
gcatcacatcgactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagc |
39864293 |
T |
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| Q |
101 |
ggaaatgcttctcgttattcat |
122 |
Q |
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| T |
39864294 |
ggaaatgtttctctttattcat |
39864315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 39737259 - 39737156
Alignment:
| Q |
15 |
aaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcggaaatgcttctcg |
114 |
Q |
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| T |
39737259 |
aaactaatttcctttaaataaacctcaaaaagaaaatacctggcgattgtgcacatatttcatgtatgaaggcacatcgggatagcggaaatgtttctcg |
39737160 |
T |
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| Q |
115 |
ttat |
118 |
Q |
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|||| |
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| T |
39737159 |
ttat |
39737156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 37465374 - 37465462
Alignment:
| Q |
15 |
aaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcgga |
103 |
Q |
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| T |
37465374 |
aaacaaattgcctttaattaatcctcaaaaggaaaatacctggcgattgtgcacgtattccaagtaagaaggcacatcaggatagcgga |
37465462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 39897587 - 39897675
Alignment:
| Q |
11 |
gactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatag |
99 |
Q |
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| T |
39897587 |
gactaaacaaattgacttcaattaaaccgcaaaaggaaaataccagggtattgtgcacatattccaagtatgaaggcacatcaggatag |
39897675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 39847043 - 39847116
Alignment:
| Q |
39 |
tcaaaaaggaaatacctggagattgtgcacatattccaagtatgaacgcacatcaggatagcggaaatgcttct |
112 |
Q |
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| T |
39847043 |
tcaaaaagaaaatacctggcgattgtacacatattccatgtatgaaagaacattaggatagcggatatgtttct |
39847116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 39910442 - 39910474
Alignment:
| Q |
61 |
ttgtgcacatattccaagtatgaacgcacatca |
93 |
Q |
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| T |
39910442 |
ttgtgcacatattccaagtatgaacacacatca |
39910474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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