View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_6 (Length: 461)

Name: NF0226_low_6
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_6
NF0226_low_6
[»] chr3 (1 HSPs)
chr3 (22-433)||(50157149-50157566)
[»] chr1 (2 HSPs)
chr1 (161-215)||(27220058-27220112)
chr1 (161-215)||(27214088-27214142)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 50157566 - 50157149
Alignment:
22 catcatcatcttgcttccaatgtattagggattttccaacctcttctaatctctagttttctctt------tcctatgatgttttatggtcaaatctgac 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||||||||||||||||| ||| |    
50157566 catcatcatcttgtttccaatgtattagggattttccaacctcttctaatctctagttttctcttggtgtctcctctgatgttttatggtcaaacctggc 50157467  T
116 cgaacagttgactcaaaaaatgtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac 215  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
50157466 cgaacagttggctcaaaaaaggtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac 50157367  T
216 taagctctaatcattttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag 315  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
50157366 taagctctaatcagtttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag 50157267  T
316 caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgattt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
50157266 caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgattt 50157167  T
416 cgattaaataattgaact 433  Q
    ||||||||||||||||||    
50157166 cgattaaataattgaact 50157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27220112 - 27220058
Alignment:
161 caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac 215  Q
    |||||||||||||||||  ||||||||||||||| ||||| | ||||||||||||    
27220112 caaggctagatgacttgcattacaagtaatctcaagagacataggctaaaacaac 27220058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27214142 - 27214088
Alignment:
161 caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac 215  Q
    ||||||||||| |||||  ||||||||||||||| ||||| | ||||||||||||    
27214142 caaggctagattacttgcattacaagtaatctcatgagacgtaggctaaaacaac 27214088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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