View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend
Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_6 (Length: 461)
Name: NF0226_low_6
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_6
Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 50157566 - 50157149
Alignment:
Q
22
catcatcatcttgcttccaatgtattagggattttccaacctcttctaatctctagttttctctt------tcctatgatgttttatggtcaaatctgac
115
Q
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
T
50157566
catcatcatcttgtttccaatgtattagggattttccaacctcttctaatctctagttttctcttggtgtctcctctgatgttttatggtcaaacctggc
50157467
T
Q
116
cgaacagttgactcaaaaaatgtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac
215
Q
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
50157466
cgaacagttggctcaaaaaaggtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac
50157367
T
Q
216
taagctctaatcattttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag
315
Q
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
50157366
taagctctaatcagtttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag
50157267
T
Q
316
caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgattt
415
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
T
50157266
caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgattt
50157167
T
Q
416
cgattaaataattgaact
433
Q
||||||||||||||||||
T
50157166
cgattaaataattgaact
50157149
T
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27220112 - 27220058
Alignment:
Q
161
caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac
215
Q
||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||
T
27220112
caaggctagatgacttgcattacaagtaatctcaagagacataggctaaaacaac
27220058
T
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27214142 - 27214088
Alignment:
Q
161
caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac
215
Q
||||||||||| ||||| ||||||||||||||| ||||| | ||||||||||||
T
27214142
caaggctagattacttgcattacaagtaatctcatgagacgtaggctaaaacaac
27214088
T
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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