View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_60 (Length: 201)
Name: NF0226_low_60
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_60
Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 11050437 - 11050521
Alignment:
Q
13
gatattaaagagaggatgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatcttta
97
Q
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||
T
11050437
gatattaaagagaggatgcttcttggaatagtttatcatcaaatttcactttccttcttcgttgaaaattaaaaatagatcttta
11050521
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 11019438 - 11019507
Alignment:
Q
28
atgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatcttta
97
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
T
11019438
atgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattaaaaatagatcttta
11019507
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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