View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_7 (Length: 460)
Name: NF0226_low_7
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 42677290 - 42677514
Alignment:
| Q |
30 |
tttggttcgtagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtgg |
129 |
Q |
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| T |
42677290 |
tttggttcatagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaattatttgctttttgaacacatatatactacatgttttcgtgg |
42677389 |
T |
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| Q |
130 |
taccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaagggga |
229 |
Q |
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| T |
42677390 |
taccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaagggga |
42677489 |
T |
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| Q |
230 |
ggttaattcatacagctttgtctaa |
254 |
Q |
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| T |
42677490 |
ggttaattcatacagctttgtctaa |
42677514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 52835053 - 52835123
Alignment:
| Q |
39 |
tagaatttgaatc--ctgaggtagcaaaa-ttgttgccgatactatgcacaattatttgctttgtgaacac |
106 |
Q |
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| T |
52835053 |
tagaatttgaatctcctgaggtagcaaaaattgttgctgatactatgcacaattatttgctctttgaacac |
52835123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 48968887 - 48968805
Alignment:
| Q |
62 |
aaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca |
148 |
Q |
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| T |
48968887 |
aaaattgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
195 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
243 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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