View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_8 (Length: 458)
Name: NF0226_low_8
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 94 - 448
Target Start/End: Complemental strand, 427229 - 426865
Alignment:
| Q |
94 |
acttgagtccaaagtgagatagataattcattatgatgtcttaatgagaacttgattctcaagtcttttgataaaatttagttcctgatgtgatgaattt |
193 |
Q |
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| T |
427229 |
acttgagtccaaagtgagatagataattcattatgatgtcttaatgagaacttgattctcaagtcttttgataaaatttagttcctgatgtgatgaattt |
427130 |
T |
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| Q |
194 |
aaatccttattctgaactctgcatgattttgaacttgaatctgatgtgtgattctgaagtatgaatctaaactggatgatgtctttcttaggttat---- |
289 |
Q |
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| T |
427129 |
aaatccttattctgaactctgcatgattttgaacttgaatctgatgtgtgattctgaagtatgaatctaaactagatgatgcctttcttaggttatgttt |
427030 |
T |
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| Q |
290 |
-----------------gtttctttggataatttcaatgttttcttgaataagtaaaattgattgaataaaaatgaaattcctcattatgcaaacatttc |
372 |
Q |
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| T |
427029 |
aatgatcaagaagccttgtttctttggataatttcaatgttttcttgaataagtaaaattgattgaataaaaatgaaattcctcattatgcaaacatttc |
426930 |
T |
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| Q |
373 |
cttatctattgattgaatcaaagattgatacatgatttgacaaaggtacctctcaattgttgtatttgtgtctgtg |
448 |
Q |
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| T |
426929 |
cttatctattgattgaatcaaa-----------gatttgacaaaggtacctctcaattgttgtatttgtgtctgtg |
426865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 427330 - 427263
Alignment:
| Q |
29 |
agaaggtatgccttgtgatcttggaggacaggccaaaatatagtcgtctgctcattctcaagtggact |
96 |
Q |
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| T |
427330 |
agaaagtatgccttgtgatcttggaggacaggccaaaatatagtcgtctgctcattctcaagtggact |
427263 |
T |
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