View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_8 (Length: 458)
Name: NF0226_low_8
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_8
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 94 - 448
Target Start/End: Complemental strand, 427229 - 426865
Alignment:
Q
94
acttgagtccaaagtgagatagataattcattatgatgtcttaatgagaacttgattctcaagtcttttgataaaatttagttcctgatgtgatgaattt
193
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
427229
acttgagtccaaagtgagatagataattcattatgatgtcttaatgagaacttgattctcaagtcttttgataaaatttagttcctgatgtgatgaattt
427130
T
Q
194
aaatccttattctgaactctgcatgattttgaacttgaatctgatgtgtgattctgaagtatgaatctaaactggatgatgtctttcttaggttat----
289
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
T
427129
aaatccttattctgaactctgcatgattttgaacttgaatctgatgtgtgattctgaagtatgaatctaaactagatgatgcctttcttaggttatgttt
427030
T
Q
290
-----------------gtttctttggataatttcaatgttttcttgaataagtaaaattgattgaataaaaatgaaattcctcattatgcaaacatttc
372
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
427029
aatgatcaagaagccttgtttctttggataatttcaatgttttcttgaataagtaaaattgattgaataaaaatgaaattcctcattatgcaaacatttc
426930
T
Q
373
cttatctattgattgaatcaaagattgatacatgatttgacaaaggtacctctcaattgttgtatttgtgtctgtg
448
Q
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
T
426929
cttatctattgattgaatcaaa-----------gatttgacaaaggtacctctcaattgttgtatttgtgtctgtg
426865
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 427330 - 427263
Alignment:
Q
29
agaaggtatgccttgtgatcttggaggacaggccaaaatatagtcgtctgctcattctcaagtggact
96
Q
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
427330
agaaagtatgccttgtgatcttggaggacaggccaaaatatagtcgtctgctcattctcaagtggact
427263
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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