View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_9 (Length: 444)
Name: NF0226_low_9
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_9
[» ] scaffold0002 (2 HSPs)
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 13660760 - 13660334
Alignment:
Q
14
gaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttc
113
Q
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||
T
13660760
gaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttc
13660661
T
Q
114
tatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctctga
213
Q
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||
T
13660660
tatgatgcccttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccga
13660561
T
Q
214
ataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagat
313
Q
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13660560
atatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagat
13660461
T
Q
314
aatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgcccca
413
Q
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13660460
aatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgcccca
13660361
T
Q
414
ccatcctccatgcaacagctagggctt
440
Q
||||||||||||||||||||| |||||
T
13660360
ccatcctccatgcaacagctaaggctt
13660334
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 13653262 - 13652834
Alignment:
Q
12
atgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatt
111
Q
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
T
13653262
atgaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatt
13653163
T
Q
112
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctct
211
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
T
13653162
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctct
13653063
T
Q
212
gaataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag
311
Q
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13653062
gaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag
13652963
T
Q
312
ataatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc
411
Q
||||||| |||||| ||||| ||||||| || | | |||||| || ||| | || |||| |||||| ||||||| ||||||||| |||| ||||||| |
T
13652962
ataatactccttgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctc
13652863
T
Q
412
caccatcctccatgcaacagctagggctt
440
Q
| |||||||||||||||||| || |||||
T
13652862
cgccatcctccatgcaacagttaaggctt
13652834
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 28609391 - 28609086
Alignment:
Q
12
atgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatt
111
Q
|||| ||||||| ||||||||||||||| || |||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||||| ||
T
28609391
atgagcccgaaccaaaattgtttgatgctaaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgtt
28609292
T
Q
112
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctct
211
Q
||| ||| || |||||||||||||||||||| ||||||| ||| |||| | || ||| |||||||||||||||| | |||||||||||||| |||
T
28609291
cctacgatttccctgtccaactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttct
28609192
T
Q
212
gaataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag
311
Q
||||| |||||| |||||||||| |||| | | | | ||||||| ||| ||||| || || |||| ||||| ||||||||| |||||||||||| ||
T
28609191
gaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatag
28609092
T
Q
312
ataata
317
Q
||||||
T
28609091
ataata
28609086
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 437526 - 437815
Alignment:
Q
25
aaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttctatgatgccct
124
Q
|||||| | ||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| || ||| ||| ||||
T
437526
aaaattatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattccct
437625
T
Q
125
tgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataa
224
Q
||||||||||| ||||||| ||| ||| || |||| | || ||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||
T
437626
tgtccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatag
437725
T
Q
225
aatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagata
314
Q
|||||||||| |||| ||| | | ||||||| ||| ||||| || || |||| ||||||||||||||| |||||||||||| |||||
T
437726
aatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatagata
437815
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 437866 - 437941
Alignment:
Q
365
tcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctagggctt
440
Q
||||||| |||||||||||||| ||||||| |||||||| | | || |||| |||||||||||||||| |||||
T
437866
tcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggctt
437941
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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