View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_9 (Length: 444)
Name: NF0226_low_9
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_9 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 13660760 - 13660334
Alignment:
| Q |
14 |
gaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
13660760 |
gaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatttc |
13660661 |
T |
|
| Q |
114 |
tatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctctga |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| || |
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| T |
13660660 |
tatgatgcccttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccga |
13660561 |
T |
|
| Q |
214 |
ataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagat |
313 |
Q |
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||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660560 |
atatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagat |
13660461 |
T |
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| Q |
314 |
aatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgcccca |
413 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660460 |
aatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgcccca |
13660361 |
T |
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| Q |
414 |
ccatcctccatgcaacagctagggctt |
440 |
Q |
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| T |
13660360 |
ccatcctccatgcaacagctaaggctt |
13660334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 13653262 - 13652834
Alignment:
| Q |
12 |
atgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
13653262 |
atgaacccgaactaaaattgtttgatgccaacatatccccgataactccaagttctggacaatcacaccattccaataaacttgaaaaggctcgaacatt |
13653163 |
T |
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| Q |
112 |
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13653162 |
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctct |
13653063 |
T |
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| Q |
212 |
gaataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13653062 |
gaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
13652963 |
T |
|
| Q |
312 |
ataatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc |
411 |
Q |
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||||||| |||||| ||||| ||||||| || | | |||||| || ||| | || |||| |||||| ||||||| ||||||||| |||| ||||||| | |
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| T |
13652962 |
ataatactccttgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctc |
13652863 |
T |
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| Q |
412 |
caccatcctccatgcaacagctagggctt |
440 |
Q |
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| T |
13652862 |
cgccatcctccatgcaacagttaaggctt |
13652834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 28609391 - 28609086
Alignment:
| Q |
12 |
atgaacccgaactaaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatt |
111 |
Q |
| |
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|||| ||||||| ||||||||||||||| || |||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||||||||| || |
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| T |
28609391 |
atgagcccgaaccaaaattgtttgatgctaaaatatcccctaaaaccccaagttctggacagtcacaccattccaataagtttaaaaagactcgagtgtt |
28609292 |
T |
|
| Q |
112 |
tctatgatgcccttgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctct |
211 |
Q |
| |
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||| ||| || |||||||||||||||||||| ||||||| ||| |||| | || ||| |||||||||||||||| | |||||||||||||| ||| |
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| T |
28609291 |
cctacgatttccctgtccaactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttct |
28609192 |
T |
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| Q |
212 |
gaataggatataaaatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
311 |
Q |
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||||| |||||| |||||||||| |||| | | | | ||||||| ||| ||||| || || |||| ||||| ||||||||| |||||||||||| || |
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| T |
28609191 |
gaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatag |
28609092 |
T |
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| Q |
312 |
ataata |
317 |
Q |
| |
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|||||| |
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| T |
28609091 |
ataata |
28609086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 437526 - 437815
Alignment:
| Q |
25 |
aaaattgtttgatgccaacatatcccctataactccaagttctggacaatcacaccattccaataaattcgaaaagactcgaacatttctatgatgccct |
124 |
Q |
| |
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|||||| | ||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| || ||| ||| |||| |
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| T |
437526 |
aaaattatctgatgccaaaatgtcccctaaaactccaagttctggacaatcacaccagtccaataaatttaaaaagacacgattgttcctacgattccct |
437625 |
T |
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| Q |
125 |
tgtccaactatgtataaatcacaaccaaatttgtctaaattatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataa |
224 |
Q |
| |
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||||||||||| ||||||| ||| ||| || |||| | || ||| |||||||||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
437626 |
tgtccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatag |
437725 |
T |
|
| Q |
225 |
aatcattgttattcactgctttaagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagata |
314 |
Q |
| |
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|||||||||| |||| ||| | | ||||||| ||| ||||| || || |||| ||||||||||||||| |||||||||||| ||||| |
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| T |
437726 |
aatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatagata |
437815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 437866 - 437941
Alignment:
| Q |
365 |
tcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctagggctt |
440 |
Q |
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||||||| |||||||||||||| ||||||| |||||||| | | || |||| |||||||||||||||| ||||| |
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| T |
437866 |
tcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggctt |
437941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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