View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227-INSERTION-10 (Length: 479)
Name: NF0227-INSERTION-10
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Complemental strand, 27058912 - 27058441
Alignment:
| Q |
8 |
cttccccatttcaactcattctcgtatatacttttgtattatatatgctttattggcattggtttttcaaaggccagattctcactcaccaatactttta |
107 |
Q |
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| T |
27058912 |
cttccccatttcaactcattctcgtatatacttttgtattatatatgctttattggcattggtttttcaaaggccagattctcactcaccaatcctttta |
27058813 |
T |
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| Q |
108 |
tatagagatgtaatgttcttggcattcatatttttatctgtactgtgagagttctaaaatagttgtgaaccttatttgtatacataccgtgaattgatat |
207 |
Q |
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| T |
27058812 |
tatagagatgtaatgttcttggcattcatatttttatctgtactgtgagagttctaaaatagttgtgaaccttatttgtatacataccgtgaattgatat |
27058713 |
T |
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| Q |
208 |
taagtttggttatcaggtacattaagtttgatacattcactcccgcagcagaacgagggcttcctgttattagagttattagtcgaatggctttgcaaga |
307 |
Q |
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| T |
27058712 |
taagtttggttatcaggtacattaagtttgatacattcactcccgcagcagaacgagggcttcctgttactagagttattagtcgaatggctttgcaaga |
27058613 |
T |
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| Q |
308 |
gattcttgctcatgcagacggggatgatgtcaatatgaatggtagtaatgttgtcgattttattgatcatgaaactaaggtaattaaggaaagcttctaa |
407 |
Q |
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| T |
27058612 |
gattcttgctcatgcagacggggatgatgtcaatatgaatggttgtaatgttgtcgatttcattgatcatgaaactaaggtaattaaagaaagcttctat |
27058513 |
T |
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| Q |
408 |
taaagattctccatacattgctaacataggtatttttgaagttttttgacaatattttatttggtagtgtga |
479 |
Q |
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| T |
27058512 |
tgaagattctccatacattgctaacataggtatttttgaagttttttgacaatattttatttggtagtgtga |
27058441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 196 - 464
Target Start/End: Original strand, 6314966 - 6315231
Alignment:
| Q |
196 |
gtgaattgatattaagtttggttatcaggtacattaagtttgatacattcactcccgcagcagaacgagggcttcctgttattagagttattagtcgaat |
295 |
Q |
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| T |
6314966 |
gtgaattgatattaagtttggttatcaggtacattaagtttgatacattcactcctgcagcagaacgagggcttccagttactagagttattagccgaat |
6315065 |
T |
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| Q |
296 |
ggctttgcaagagattcttgctcatgcagacggggatgatgtcaatatgaatggtagtaatgttgtcgattttattgatcatgaaactaaggtaattaag |
395 |
Q |
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| T |
6315066 |
ggctttgcaagagattcttgcacgtgcagtcggggatgatgtcattatgaatggtagtaatgttgtcgatttcattgatcatgaaactaaggtagtcaaa |
6315165 |
T |
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| Q |
396 |
gaaagcttctaataaagattctccatacattgctaacataggtatttttgaagttttttgacaatattt |
464 |
Q |
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| T |
6315166 |
gaaaccttttatt---gactctcctcacattgcaaacataggtattttttaagcttttaaacaatattt |
6315231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 6314611 - 6314672
Alignment:
| Q |
139 |
ttttatctgtactgtgagagttc------taaaatagttgtgaaccttatttgtatacatac |
194 |
Q |
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| T |
6314611 |
ttttatctgtactgtgagagttcagggtctaaaatagttgtgaaccttacttgtatacatac |
6314672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 43734405 - 43734491
Alignment:
| Q |
22 |
ctcattctcgtatatacttttgtattatatatgctttattggcattggtttttcaaaggccagattctcactcaccaatacttttat |
108 |
Q |
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| T |
43734405 |
ctcatttttgtatatacctttgtattatatatgctttatttgcattggtttttcaaaggtcaaattctcacttaccaatccttttat |
43734491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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