View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0227-INSERTION-11 (Length: 432)
Name: NF0227-INSERTION-11
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 34327388 - 34327031
Alignment:
| Q |
8 |
tcaagacaattggagccgttgatgggacttataattaccctaaacaaggaaccatgttcaaatattcccctacaaggatccttccaagttctgaatttaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327388 |
tcaagacaattggagccgttgatgggacttataattaccctaaacaaggaaccatgttcaaatattcccctacaaggatccttccaagttctgaatttaa |
34327289 |
T |
|
| Q |
108 |
taaaataaaagagagagaaagttctatgatgatgaattatttgttaagtaacatgacattggaaagatatatacataggacattccctacaaatatgtca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327288 |
taaaataaaagagagagaaagttctatgatgatgaattatttgttaagtaacatgacattggaaagatatatacataggacattccctacaaatatgtca |
34327189 |
T |
|
| Q |
208 |
ttgtttgtaaggtaaggtcccattgcccaaaaacacgataccgaaagggtgtatgcctttgagagggaaatcatggtgatgaagcatgcaggcctgaact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327188 |
ttgtttgtaaggtaaggtcccattgcccaaaaacacgataccgaaagggtgtatggctttgagagggaaatcatggtgatgaagcatgcaggcctgaact |
34327089 |
T |
|
| Q |
308 |
tgttgacatcaacatgggacaacctgttattgctccaagaaatcatttaactaattca |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34327088 |
tgttgacatcaacatgggacaacctgttattgctccaagaaatcatttaactaattca |
34327031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1670 times since January 2019
Visitors: 2392