View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227-INSERTION-20 (Length: 395)
Name: NF0227-INSERTION-20
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-20 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 33968122 - 33967909
Alignment:
| Q |
112 |
aagttataccacgcttctcaa-cttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaataaggattctgtgaagcattttaaaa |
210 |
Q |
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| T |
33968122 |
aagttaaaccacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttgaaaaaggattctgtgaagcattttaaaa |
33968023 |
T |
|
| Q |
211 |
gaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgttaaatcaattaagttctgccgtgtttaggattga-aaaatgcaatatcc |
309 |
Q |
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| T |
33968022 |
gaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgctaaattaattaagttctgccgtgtttaggattgaaaaaatgcaatat-c |
33967924 |
T |
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| Q |
310 |
taaataacattaccg |
324 |
Q |
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||||||||||||||| |
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| T |
33967923 |
taaataacattaccg |
33967909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 33965105 - 33965030
Alignment:
| Q |
4 |
acattgaaagctttggccttctaagaaaaactatttcgaacac-tagaaaaatttcgcttttactaaaatctataa |
78 |
Q |
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| T |
33965105 |
acattgaaagctttggccttctaagaaaaactatttcaaacacagagaaaattttcgcttttactaaaatcaataa |
33965030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 33964996 - 33964954
Alignment:
| Q |
341 |
ccaatcatacaaagaaaattatttcaaactcaaatttacccat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33964996 |
ccaatcatacaaagaaaattatttcaaactcaaatttaaccat |
33964954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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