View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0227-INSERTION-22 (Length: 589)

Name: NF0227-INSERTION-22
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0227-INSERTION-22
NF0227-INSERTION-22
[»] chr1 (10 HSPs)
chr1 (12-543)||(31047698-31048222)
chr1 (218-271)||(25127606-25127659)
chr1 (443-512)||(32261032-32261103)
chr1 (359-401)||(13125793-13125835)
chr1 (452-513)||(14352964-14353026)
chr1 (340-398)||(20566987-20567044)
chr1 (334-399)||(26332893-26332958)
chr1 (331-391)||(37990547-37990607)
chr1 (448-510)||(49959041-49959105)
chr1 (446-513)||(27916497-27916566)
[»] chr8 (8 HSPs)
chr8 (319-401)||(33839263-33839345)
chr8 (331-394)||(31574083-31574146)
chr8 (332-401)||(33021225-33021293)
chr8 (331-396)||(17847459-17847524)
chr8 (506-543)||(4812632-4812669)
chr8 (506-543)||(28332631-28332668)
chr8 (453-513)||(31573934-31573995)
chr8 (448-491)||(13985320-13985364)
[»] chr2 (9 HSPs)
chr2 (326-514)||(27248122-27248316)
chr2 (213-397)||(30720958-30721141)
chr2 (443-513)||(39287182-39287254)
chr2 (448-510)||(26345575-26345638)
chr2 (448-513)||(10942732-10942798)
chr2 (448-513)||(10948601-10948667)
chr2 (506-543)||(39680045-39680082)
chr2 (506-543)||(40699446-40699483)
chr2 (448-510)||(41304604-41304668)
[»] chr7 (6 HSPs)
chr7 (329-401)||(8260369-8260441)
chr7 (447-513)||(11081520-11081588)
chr7 (446-513)||(6048882-6048951)
chr7 (506-543)||(11084482-11084519)
chr7 (333-390)||(40281722-40281778)
chr7 (503-543)||(12310161-12310201)
[»] chr4 (9 HSPs)
chr4 (319-401)||(3759897-3759980)
chr4 (331-401)||(47151226-47151295)
chr4 (209-251)||(3759808-3759850)
chr4 (446-513)||(9022359-9022428)
chr4 (331-396)||(12102019-12102083)
chr4 (506-543)||(18534978-18535015)
chr4 (446-513)||(52043591-52043660)
chr4 (447-513)||(10112925-10112993)
chr4 (342-390)||(53405066-53405114)
[»] chr3 (4 HSPs)
chr3 (331-401)||(15823938-15824008)
chr3 (335-398)||(27703505-27703568)
chr3 (447-510)||(7768552-7768617)
chr3 (444-513)||(13893359-13893429)
[»] chr6 (5 HSPs)
chr6 (327-401)||(7293715-7293789)
chr6 (458-513)||(17904571-17904627)
chr6 (207-244)||(7293574-7293612)
chr6 (453-513)||(6843173-6843234)
chr6 (466-513)||(4595049-4595097)
[»] chr5 (10 HSPs)
chr5 (331-401)||(13294562-13294634)
chr5 (448-513)||(32520432-32520497)
chr5 (444-513)||(26406687-26406757)
chr5 (446-510)||(29748349-29748415)
chr5 (348-401)||(13295636-13295689)
chr5 (446-513)||(15224978-15225050)
chr5 (339-390)||(27912412-27912463)
chr5 (448-513)||(13294685-13294751)
chr5 (444-513)||(25838005-25838075)
chr5 (448-491)||(5777835-5777879)
[»] scaffold0045 (1 HSPs)
scaffold0045 (506-543)||(85336-85373)
[»] scaffold0008 (1 HSPs)
scaffold0008 (450-508)||(57657-57716)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 543
Target Start/End: Complemental strand, 31048222 - 31047698
Alignment:
Q  12 ttgtgcgttttatttattctgtttgctaccataaaattgttgttactcctcacaagttctcgcaagtggggagaattttattttcgctgtgcatattttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||  |||||||||    
T  31048222 ttgtgcgttttatttattctgtttgctaccataaaattgttgttgctcctcacaagt----------ggggagaattttattttcgctg--catattttt 31048135  T
Q  112 tgttattgtgtttatgtgttaatctccatcatttcatctacaatgtttgagaacaaaatccagcattttcatgatatttgaaattatcaagaatgctgtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31048134 tgttattgtgtttatgtgttaatctccatcatttcatctacaatgtttgagaacaaaatccagcattttcatgatatttgaaattatcaagaatgctgtt 31048035  T
Q  212 gttttagactcaaaattgatgttttagaatctgtcaaaattgacctccgatttggagaaactggaccccgattttgggaccagttttgagacttttgtct 311  Q
    || ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31048034 gtattagactcaaaattgatgttttagaatttgtcaaaattgacctatgatttggagaaactggaccccgattttgggactagttttgagacttttgtct 31047935  T
Q  312 catgaacaatcgggccccaattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggttttannnnnnnata 411  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  31047934 cgtgaacaatcgggccccaattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggttttatttttttata 31047835  T
Q  412 aatagagatcgtc-gatg--aaaaaggatgta-atagtagaaaacaag-ggttagaaaccaacaacaaaactaggtttgtagagtactctcttggcaaca 506  Q
    ||||||||| ||| ||||  |||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  31047834 aatagagattgtcagatgaaaaaaaggatgtagatagtagaaaacaagagtttagaagccaacaacaaaactaggtttgtagagtactctcttggcaata 31047735  T
Q  507 aacactactaggattgagtcttttggtcacgagaaga 543  Q
    ||||||| || |||||||||| |||||||||||||||    
T  31047734 aacactaatatgattgagtctcttggtcacgagaaga 31047698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 25127606 - 25127659
Alignment:
Q  218 gactcaaaattgatgttttagaatctgtcaaaattgacctccgatttggagaaa 271  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||    
T  25127606 gactcaaaattgatgtttcagaatctgtcaaaattgagcttcgatttggagaaa 25127659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 32261032 - 32261103
Alignment:
Q  443 agtagaaaacaagggtt-agaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaacact 512  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||  ||||||| |||||||||||    
T  32261032 agtagaaaacaagggtttagaagccaacaacaaaactaaggtttgtagagttttctcttgacaacaaacact 32261103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 13125835 - 13125793
Alignment:
Q  359 cgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13125835 cgtattttcagcgtgagatttgttcctaattttgagggtttta 13125793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 14352964 - 14353026
Alignment:
Q  452 caagggttagaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaacacta 513  Q
    ||||| |||||| ||||||||||||||| |||||||||||   ||||||||||||||||||||    
T  14352964 caaggattagaagccaacaacaaaactagggtttgtagagatttctcttggcaacaaacacta 14353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 20567044 - 20566987
Alignment:
Q  340 tgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtt 398  Q
    |||||||||||||||||| | |||||||| |||||||||||||||  ||||||||||||    
T  20567044 tgaaggagaaaaataaaaacatattttcaacgtgagatttgttcc-tattttgagggtt 20566987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 26332958 - 26332893
Alignment:
Q  334 ttgcgctgaaggagaaaaataaaagcgtatttt-cagcgtgagatttgttccaaattttgagggttt 399  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||  |||||||||||||||    
T  26332958 ttgcgctgaaggataaaaataaaat-gtatttttcagcgtgagatttgttttaaattttgagggttt 26332893  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 37990547 - 37990607
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaatttt 391  Q
    |||| ||||||||||||||||||||||  |||||||||   ||||||||||||| ||||||    
T  37990547 atttcgcgctgaaggagaaaaataaaaatgtattttcaaaatgagatttgttcctaatttt 37990607  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 49959041 - 49959105
Alignment:
Q  448 aaaacaagggtt-agaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaaca 510  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  49959041 aaaacaagggtttagaagccaacaacaaaactatggtttgtagagaatcctcttggcaacaaaca 49959105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 27916497 - 27916566
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||| |||| ||| ||| ||||||||| ||||||||||   |||||||||||||||||||    
T  27916497 agaaaacaagggtttagaagccagcaagaaaactagggtttgtagagtttgctcttggcaacaaacacta 27916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 33839345 - 33839263
Alignment:
Q  319 aatcgggccccaattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    |||||| |||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  33839345 aatcggcccccgattttgcgctgatggagaaaaataaaaacgtattttcagcatgagatttgttccaaattttgagggtttta 33839263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 31574146 - 31574083
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgag 394  Q
    |||||| ||||||| | ||||| | || ||||||||||||||||| ||||||||||||||||||    
T  31574146 attttgtgctgaagaataaaaacataaacgtattttcagcgtgagttttgttccaaattttgag 31574083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 33021293 - 33021225
Alignment:
Q  332 ttttgcgctgaaggagaaaaataaaagcgtattt-tcagcgtgagatttgttccaaattttgagggtttta 401  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||||  ||||||| |||||||||    
T  33021293 ttttgcgctgaaggagaaaa-taaaa-cgtatttctcagcgtgagatttgttgtaaattttaagggtttta 33021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 17847459 - 17847524
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgaggg 396  Q
    ||||| |||||| | ||||||||| || | |||||||||| | |||||||||||||||||||||||    
T  17847459 attttacgctgatgcagaaaaatagaaacatattttcagcttcagatttgttccaaattttgaggg 17847524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 4812669 - 4812632
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  4812669 aaacactattaggattgagtcttttggtcacgggaaga 4812632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 28332631 - 28332668
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  28332631 aaacactattaggattgagtctcttggtcacgagaaga 28332668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 513
Target Start/End: Complemental strand, 31573995 - 31573934
Alignment:
Q  453 aagggttagaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||| |||||| ||||||  ||||||||| ||||||||||  ||||||||||||||||||||    
T  31573995 aaggtttagaagccaacacgaaaactaggatttgtagagttttctcttggcaacaaacacta 31573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 13985364 - 13985320
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactag-gtttgtagagt 491  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  13985364 aaaacaaggtttagaagccaacaacaaaactagagtttgtagagt 13985320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 514
Target Start/End: Complemental strand, 27248316 - 27248122
Alignment:
Q  326 ccccaattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggttttannnnnnnataaatagagatc--gt 423  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||       ||||||| | |||  ||    
T  27248316 ccccaattttgggccgaaggagaaaaataaaaacgtatcttcagcgtgagatttgttctaaa-tttgagggttttatttctctataaatacatatcaagt 27248218  T
Q  424 ---cgatgaaaaaggatgta-atagtagaaaacaagggttagaaaccaacaacaaaact-aggtttgtagagtactctcttggcaacaaacactac 514  Q
        |||||||||| | ||| | |||||||||||||| |||||| ||||||||||| || |||||||||||  | |||||||||||||||||||||    
T  27248217 atcagatgaaaaagtaagtagagagtagaaaacaaggattagaagccaacaacaaagctaaggtttgtagataattctcttggcaacaaacactac 27248122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 397
Target Start/End: Complemental strand, 30721141 - 30720958
Alignment:
Q  213 ttttagactcaaaattgatgttttagaatctgtcaaaattgacctccgatttggagaaactggaccccgattttgggaccagttttgagacttttgtctc 312  Q
    |||| ||| ||||||||||| || || ||||| |||||||| || || |||||||||||   | |||| ||||||| ||||  ||| |||||||||||||    
T  30721141 tttttgacacaaaattgatggttcagcatctgccaaaattggcccccaatttggagaaatcagccccc-attttggaaccaaattttagacttttgtctc 30721043  T
Q  313 atgaacaatcgggccccaattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggt 397  Q
     | || ||| || | | | ||||||| |||||||||||||| |||  |||||||  |||||||||||||||  ||||||||||||    
T  30721042 gtaaaaaatgggccactatttttgcgttgaaggagaaaaattaaaatgtatttttggcgtgagatttgttcttaattttgagggt 30720958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 39287182 - 39287254
Alignment:
Q  443 agtagaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||||||||||| |||| ||||||| ||||||||| ||||||||| | |||||| |||||||||||||    
T  39287182 agtagaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttagcaacaaacacta 39287254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 26345575 - 26345638
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaaca 510  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||   |||||||| ||||||||    
T  26345575 aaaacaaggattagaagccaacaacaaaactaggatttgtagagatttctcttggtaacaaaca 26345638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 10942798 - 10942732
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactaggt-ttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||| |||||| ||||||| || ||||||  |||||||| | ||||||||||||||||||||    
T  10942798 aaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacacta 10942732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 513
Target Start/End: Complemental strand, 10948667 - 10948601
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactaggt-ttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||| |||||| ||||||| || ||||||  |||||||| | ||||||||||||||||||||    
T  10948667 aaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacacta 10948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 39680045 - 39680082
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  39680045 aaacactattaggattgagtctcttggtcacgagaaga 39680082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 40699446 - 40699483
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40699446 aaacactattaggattgagtctcttggtcacgagaaga 40699483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 41304668 - 41304604
Alignment:
Q  448 aaaacaagggtt-agaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaaca 510  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||  ||| |||||||||||||    
T  41304668 aaaacaagggtttagaagccaacaacaaaactagggtttgtaaagttttctattggcaacaaaca 41304604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 8260369 - 8260441
Alignment:
Q  329 caattttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  8260369 caattttgcgctgaagaagaaaaataaaaacgtattttcagcgtgagatttgttcctaattttgatggtttta 8260441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 11081520 - 11081588
Alignment:
Q  447 gaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  11081520 gaaaacaagggtttagaagccaacaacaaaactagggtttgtagagaattctcttggcaacaaacacta 11081588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 6048882 - 6048951
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||| |||| |||||| |||||||||| |||||| || | ||||||||||||||||||||    
T  6048882 agaaaacaagggtttagaagccaacatcaaaactagggtttgtaaagaattctcttggcaacaaacacta 6048951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 11084482 - 11084519
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  11084482 aaacactattaggattgagtctcttggtcacgagaaga 11084519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 40281778 - 40281722
Alignment:
Q  333 tttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattt 390  Q
    |||| ||||||||||||||| |||| ||||| |||||||||| || ||||||||||||    
T  40281778 tttgtgctgaaggagaaaaaaaaaa-cgtatcttcagcgtgatatctgttccaaattt 40281722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Complemental strand, 12310201 - 12310161
Alignment:
Q  503 aacaaacactactaggattgagtcttttggtcacgagaaga 543  Q
    ||||||||||| ||||||||||||| ||||||||| |||||    
T  12310201 aacaaacactattaggattgagtctcttggtcacgggaaga 12310161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 3759897 - 3759980
Alignment:
Q  319 aatcgggccccaattttgcgctgaaggagaaaa-ataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3759897 aatcgggacacaattttgctcggaaggagaaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggattta 3759980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 47151295 - 47151226
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    ||||| |||||||||| |||||||| ||  | |||||||||||| ||||||||||||||||||||||||||    
T  47151295 attttacgctgaaggataaaaataacagtat-ttttcagcgtgacatttgttccaaattttgagggtttta 47151226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 3759808 - 3759850
Alignment:
Q  209 gttgttttagactcaaaattgatgttttagaatctgtcaaaat 251  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  3759808 gttgtttttgactcaaaattgatgttttagaatctgacaaaat 3759850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 9022359 - 9022428
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||| ||||  ||||| |||||||||| ||||||||| | ||||||||||||||||||||    
T  9022359 agaaaacaagggtttagaagtcaacatcaaaactagggtttgtagagaattctcttggcaacaaacacta 9022428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 12102019 - 12102083
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgaggg 396  Q
    ||||| |||||| | | |||||||||| ||||||||| |||||||||||||||||| |||| ||||    
T  12102019 attttacgctgatgcataaaaataaaa-cgtattttctgcgtgagatttgttccaattttttaggg 12102083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 18535015 - 18534978
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  18535015 aaacactattaggattgagtctcttggtcacgagaaga 18534978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 52043660 - 52043591
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||| |||| |||||| |||||||| ||||||||||||  ||||||| || |||||||||    
T  52043660 agaaaacaagggtttagaagccaacatcaaaactaaggtttgtagagttttctcttgtcagcaaacacta 52043591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 10112925 - 10112993
Alignment:
Q  447 gaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||||||| |||| ||||||  ||||||||| ||||||||||   |||||||||||||||||||    
T  10112925 gaaaacaagggtttagaagccaacacaaaaactagggtttgtagagtttgctcttggcaacaaacacta 10112993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 53405066 - 53405114
Alignment:
Q  342 aaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattt 390  Q
    ||||||||||| |||| ||||||||||| |||  |||||||||||||||    
T  53405066 aaggagaaaaaaaaaaacgtattttcagtgtggtatttgttccaaattt 53405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 15824008 - 15823938
Alignment:
Q  331 attttgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  15824008 attttacgctgaaggagaaaaataaaaatgtattttcagcgtgagatttgttcctaattttgagggtttta 15823938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 27703568 - 27703505
Alignment:
Q  335 tgcgctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtt 398  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||| ||| | |||| ||||||    
T  27703568 tgcgctgaagaagaaaaataaaaacgtattttcagcatgagatttgatcctattttttagggtt 27703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 7768552 - 7768617
Alignment:
Q  447 gaaaacaagggtt-agaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaaca 510  Q
    ||||||||||||| |||| |||||| |||||||| ||||||||||| | |||||||||||||||||    
T  7768552 gaaaacaagggtttagaagccaacatcaaaactaaggtttgtagagaattctcttggcaacaaaca 7768617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 13893359 - 13893429
Alignment:
Q  444 gtagaaaacaagggttagaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||||||| ||||||  |||||  ||||||||| ||| ||||| | ||||||||||||||||||||    
T  13893359 gtagaaaacaaggtttagaagtcaacataaaaactagggtttatagagaattctcttggcaacaaacacta 13893429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 7293715 - 7293789
Alignment:
Q  327 cccaattttgcgctgaaggagaaaaataaaagcgta-ttttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  7293715 cccaattttgcgctgaaggagaaaaataaaa-cgtattttttagcttgagatttgttccaaattttgagggtttta 7293789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 513
Target Start/End: Complemental strand, 17904627 - 17904571
Alignment:
Q  458 ttagaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| |||||||||||||    
T  17904627 ttagaagccaacaacaaaactagggtttgtagagttttctctttgcaacaaacacta 17904571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 7293574 - 7293612
Alignment:
Q  207 ctgttgtttta-gactcaaaattgatgttttagaatctg 244  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7293574 ctgttgttttatgactcaaaattgatgttttagaatctg 7293612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 6843173 - 6843234
Alignment:
Q  453 aagggttagaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaacacta 513  Q
    |||| |||||| ||||||| ||||||| ||||||||||| | | ||||||||||||||||||    
T  6843173 aaggattagaagccaacaataaaactatggtttgtagagaattttcttggcaacaaacacta 6843234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 4595049 - 4595097
Alignment:
Q  466 caacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||||| ||||||||||  || |||||||||||||||||    
T  4595049 caacaacaaaactagggtttgtagagttttcacttggcaacaaacacta 4595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 13294562 - 13294634
Alignment:
Q  331 attttgcgctgaaggagaaaaa-taaaagcgtattttcagcgtgagatttgtt-ccaaattttgagggtttta 401  Q
    |||||||| ||||||||||||| ||||| |||||||||| |||||||||| || |||||||||||||||||||    
T  13294562 attttgcgttgaaggagaaaaaataaaaacgtattttcaacgtgagatttttttccaaattttgagggtttta 13294634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 32520432 - 32520497
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactaggtttgtagagtactctcttggcaacaaacacta 513  Q
    |||| |||| |||||| ||||||||||||||||||||||||||  ||||  |||||||||||||||    
T  32520432 aaaataaggattagaagccaacaacaaaactaggtttgtagagatctctggtggcaacaaacacta 32520497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 513
Target Start/End: Complemental strand, 26406757 - 26406687
Alignment:
Q  444 gtagaaaacaagggttagaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||| || ||||||||||||||  |||||||| ||| ||||| | ||||||||||||||||||||    
T  26406757 gtagaaaacagggtttagaaaccaacaaacaaactagggtttatagagaattctcttggcaacaaacacta 26406687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 29748349 - 29748415
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaactagg-tttgtagagtactctcttggcaacaaaca 510  Q
    |||||||||||||| |||| ||||||| ||||||||| ||||||||| | |||||||||||||||||    
T  29748349 agaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttggcaacaaaca 29748415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 13295636 - 13295689
Alignment:
Q  348 aaaaataaaagcgtattttcagcgtgagatttgttccaaattttgagggtttta 401  Q
    |||||||||| | |||||| |||||||||||| ||| |||||||||||||||||    
T  13295636 aaaaataaaaacatattttaagcgtgagatttattctaaattttgagggtttta 13295689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 15225050 - 15224978
Alignment:
Q  446 agaaaacaagggtt-agaaaccaacaacaaaactaggtt----tgtagagtactctcttggcaacaaacacta 513  Q
    |||||||||||||| |||| |||||| |||||||||| |    ||||||| ||||||||||||||||||||||    
T  15225050 agaaaacaagggtttagaagccaacatcaaaactagggtggcttgtagagaactctcttggcaacaaacacta 15224978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 27912412 - 27912463
Alignment:
Q  339 ctgaaggagaaaaataaaagcgtattttcagcgtgagatttgttccaaattt 390  Q
    |||||||||||||| |||| ||||| ||||| |||| |||||||||||||||    
T  27912412 ctgaaggagaaaaaaaaaaacgtatcttcagtgtgatatttgttccaaattt 27912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 13294685 - 13294751
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactag-gtttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||| ||| ||  ||||||||||||||| |||||||||| | |||||||||||||| |||||    
T  13294685 aaaacaaggattaaaagtcaacaacaaaactagagtttgtagagaattctcttggcaacaagcacta 13294751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 25838005 - 25838075
Alignment:
Q  444 gtagaaaacaagggttagaaaccaacaacaaaacta-ggtttgtagagtactctcttggcaacaaacacta 513  Q
    ||||||||||||| |||||| |||||||  |||||| ||||| ||||| | |||||||| |||||||||||    
T  25838005 gtagaaaacaaggtttagaagccaacaaagaaactatggtttatagagaattctcttggtaacaaacacta 25838075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 5777879 - 5777835
Alignment:
Q  448 aaaacaagggttagaaaccaacaacaaaactag-gtttgtagagt 491  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  5777879 aaaacaaggattagaagccaacaacaaaactagagtttgtagagt 5777835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 85336 - 85373
Alignment:
Q  506 aaacactactaggattgagtcttttggtcacgagaaga 543  Q
    |||||||||||||||||||||||||||| |||||||||    
T  85336 aaacactactaggattgagtcttttggttacgagaaga 85373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 508
Target Start/End: Complemental strand, 57716 - 57657
Alignment:
Q  450 aacaagggttagaaaccaacaacaaaactag-gtttgtagagtactctcttggcaacaaa 508  Q
    ||||||| |||||| |||||||||||||||| |||||||||||   ||||||||||||||    
T  57716 aacaaggtttagaagccaacaacaaaactagagtttgtagagtttactcttggcaacaaa 57657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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