View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0227-INSERTION-23 (Length: 515)

Name: NF0227-INSERTION-23
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0227-INSERTION-23
NF0227-INSERTION-23
[»] chr3 (12 HSPs)
chr3 (232-502)||(55218634-55218905)
chr3 (233-493)||(51191861-51192122)
chr3 (271-515)||(39133528-39133770)
chr3 (233-486)||(8457793-8458047)
chr3 (240-493)||(43018351-43018605)
chr3 (240-501)||(51951817-51952079)
chr3 (240-493)||(13444007-13444262)
chr3 (233-432)||(39383402-39383602)
chr3 (233-493)||(21689628-21689887)
chr3 (233-404)||(26400155-26400326)
chr3 (233-362)||(7622657-7622785)
chr3 (233-268)||(39135498-39135533)
[»] chr8 (11 HSPs)
chr8 (233-501)||(25663386-25663655)
chr8 (240-498)||(5839649-5839908)
chr8 (233-501)||(32577918-32578201)
chr8 (233-405)||(11503058-11503230)
chr8 (242-392)||(32282841-32282991)
chr8 (233-493)||(36531025-36531286)
chr8 (233-377)||(40395245-40395387)
chr8 (252-392)||(10342353-10342497)
chr8 (240-430)||(14219792-14219983)
chr8 (256-296)||(31037712-31037752)
chr8 (445-492)||(32283005-32283053)
[»] chr6 (13 HSPs)
chr6 (233-493)||(32957327-32957588)
chr6 (232-493)||(7435604-7435866)
chr6 (233-493)||(7597449-7597710)
chr6 (233-397)||(7608464-7608628)
chr6 (245-387)||(6192539-6192681)
chr6 (232-430)||(13406070-13406269)
chr6 (232-357)||(34183109-34183234)
chr6 (233-493)||(12523500-12523740)
chr6 (233-493)||(31797965-31798226)
chr6 (248-314)||(29025240-29025306)
chr6 (409-474)||(6192479-6192544)
chr6 (440-493)||(7607777-7607831)
chr6 (346-403)||(32814074-32814131)
[»] chr7 (22 HSPs)
chr7 (233-501)||(23362170-23362439)
chr7 (233-501)||(25611352-25611621)
chr7 (233-499)||(3962283-3962550)
chr7 (233-488)||(14160358-14160614)
chr7 (233-501)||(30466549-30466820)
chr7 (232-493)||(9360631-9360893)
chr7 (240-493)||(4595026-4595280)
chr7 (233-405)||(8150844-8151016)
chr7 (233-493)||(40187247-40187509)
chr7 (233-493)||(42851854-42852118)
chr7 (275-440)||(28423910-28424075)
chr7 (233-430)||(9026516-9026711)
chr7 (235-392)||(5866208-5866365)
chr7 (233-358)||(6596171-6596296)
chr7 (294-493)||(24267772-24267972)
chr7 (233-393)||(35827557-35827717)
chr7 (233-405)||(2405150-2405321)
chr7 (233-377)||(21946913-21947050)
chr7 (318-405)||(33336091-33336178)
chr7 (345-413)||(12152659-12152727)
chr7 (232-315)||(12152752-12152836)
chr7 (445-501)||(5866113-5866170)
[»] chr5 (12 HSPs)
chr5 (233-501)||(9609491-9609760)
chr5 (234-501)||(30796788-30797056)
chr5 (233-501)||(29242097-29242366)
chr5 (246-515)||(1721839-1722108)
chr5 (233-385)||(39860924-39861076)
chr5 (233-360)||(36978727-36978857)
chr5 (233-321)||(4052904-4052992)
chr5 (360-489)||(27452586-27452715)
chr5 (233-297)||(16007121-16007185)
chr5 (337-403)||(4052843-4052909)
chr5 (233-331)||(27452472-27452582)
chr5 (233-279)||(40109287-40109333)
[»] scaffold0016 (1 HSPs)
scaffold0016 (233-501)||(187007-187276)
[»] chr4 (17 HSPs)
chr4 (233-501)||(26429181-26429450)
chr4 (233-515)||(35853027-35853309)
chr4 (232-493)||(17423810-17424072)
chr4 (232-493)||(48446535-48446797)
chr4 (233-493)||(2536968-2537229)
chr4 (233-502)||(52759116-52759386)
chr4 (233-493)||(26006074-26006335)
chr4 (233-486)||(33846204-33846458)
chr4 (233-493)||(9034787-9035035)
chr4 (233-493)||(12274069-12274330)
chr4 (233-476)||(25058293-25058537)
chr4 (240-493)||(8169321-8169574)
chr4 (233-493)||(54552495-54552755)
chr4 (233-493)||(22359230-22359490)
chr4 (243-478)||(19396165-19396401)
chr4 (233-493)||(791834-792073)
chr4 (263-373)||(23860011-23860121)
[»] scaffold0279 (1 HSPs)
scaffold0279 (233-515)||(6581-6863)
[»] scaffold0577 (1 HSPs)
scaffold0577 (233-501)||(2188-2457)
[»] scaffold0450 (1 HSPs)
scaffold0450 (243-501)||(5172-5431)
[»] chr2 (17 HSPs)
chr2 (233-493)||(23769764-23770025)
chr2 (233-493)||(24477465-24477726)
chr2 (236-488)||(45085977-45086230)
chr2 (233-463)||(22605838-22606068)
chr2 (253-493)||(10213707-10213948)
chr2 (233-475)||(38451682-38451924)
chr2 (233-501)||(23407738-23408007)
chr2 (233-353)||(11616661-11616781)
chr2 (241-362)||(31411362-31411483)
chr2 (279-515)||(40074065-40074298)
chr2 (243-429)||(27177677-27177864)
chr2 (227-405)||(1604834-1605011)
chr2 (233-367)||(32025536-32025669)
chr2 (233-304)||(20214282-20214353)
chr2 (227-336)||(28317799-28317907)
chr2 (227-276)||(1605079-1605128)
chr2 (272-305)||(2599233-2599266)
[»] scaffold0200 (1 HSPs)
scaffold0200 (233-493)||(26927-27188)
[»] scaffold0011 (1 HSPs)
scaffold0011 (235-493)||(58288-58548)
[»] chr1 (8 HSPs)
chr1 (233-385)||(48522162-48522314)
chr1 (232-403)||(19956516-19956684)
chr1 (233-376)||(26347349-26347492)
chr1 (233-515)||(25070815-25071076)
chr1 (256-403)||(11079921-11080068)
chr1 (245-325)||(15393504-15393584)
chr1 (353-407)||(15327469-15327523)
chr1 (256-390)||(31592302-31592436)
[»] scaffold0004 (1 HSPs)
scaffold0004 (271-501)||(216343-216574)
[»] scaffold0360 (1 HSPs)
scaffold0360 (248-331)||(5316-5399)
[»] scaffold0201 (1 HSPs)
scaffold0201 (232-315)||(20698-20781)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 232 - 502
Target Start/End: Original strand, 55218634 - 55218905
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  55218634 attttttgacaaaaagaaacttattgcatttcatttatgataatagtagaggtacaagatggaatcctaatatgaatatggaaactagcatgacgcaaag 55218733  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |    
T  55218734 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-t 55218832  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaaa 502  Q
    |||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  55218833 taataaatgcgctaaaattagatacgccacttttactaccataaagactgtctaccacagttttggagtcaaa 55218905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 51191861 - 51192122
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||     
T  51191861 ttttttgacaagaagaaacttattgcatttcattcataataatagtacagatacaagatgaaatcataatatgaatatggaaactagcatgacgcaaagt 51191960  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    || |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||| ||| ||    
T  51191961 caatctagcaaagctatgaacgacttcgttggcttgtctctgaataaacctaacatcagaggttactaaatcataagctaacagacgtctacagtca-tt 51192059  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || ||| | || |||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  51192060 gattactacactaaaattagagacgccacttttactgccataaagactatctaccacagtttt 51192122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 271 - 515
Target Start/End: Complemental strand, 39133770 - 39133528
Alignment:
Q  271 ataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtc 370  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39133770 ataatagtagagatacaagattgaatcctaatatgaatatggaaactagcatgacgcaaagtcactctagcaaagctatgagcgacttcgttggcttgtc 39133671  T
Q  371 tccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattagagacgccac-tttactac 468  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||| ||  |||| |||||||||||| ||| ||||||||    
T  39133670 tccgaatgaacctaacatcagaggttactaaatcagaagctaacaaacgtctacaatca-ttaattac--cgctaaaattagagacgtcacttttactac 39133574  T
Q  469 cataaagactgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
    |||||||| | |||||||||||||| ||||| ||||||||| |||||    
T  39133573 cataaagattatctaccacagttttggagtc-aaactcaaagtccac 39133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 233 - 486
Target Start/End: Complemental strand, 8458047 - 8457793
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  8458047 tttttttacaagaagaaacttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcatgacgcaaagc 8457948  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcattt 431  Q
    || | |||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||  ||||||||||| ||    
T  8457947 cattatagcaaagctataagcgacttcattggcttgtcttcgaataaacctaacatcagaggttactaaatcaaaagctaacaggtgtctacaatca-tt 8457849  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctacca 486  Q
     ||||||||||| |||||||||||| ||| |||||| |||||||| || |||||||    
T  8457848 gataactgcgctgaaattagagacgtcacttttactgccataaaggctatctacca 8457793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 240 - 493
Target Start/End: Original strand, 43018351 - 43018605
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||    
T  43018351 acaagaagaaatttattgcatttcattcataataatagtagagatacaagatggaatcataatatgaatatggaaactagcatgacgcaaaaccactata 43018450  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataact 438  Q
    ||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||  |||||| | || ||| || |||    
T  43018451 gcaaaactatgagcaactttgttggcttgtctccgaataaacctaacatcagaggttactaaatcagaagctaacatgcgtctatagtc-tttgattact 43018549  T
Q  439 gcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    ||||| |||||||||||| ||| |||| ||||||||||||| |||||||| |||||    
T  43018550 gcgctaaaattagagacgtcacttttaataccataaagactatctaccacggtttt 43018605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 240 - 501
Target Start/End: Complemental strand, 51952079 - 51951817
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  51952079 acaaaaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgtaaagccactcta 51951980  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataact 438  Q
    ||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||| |||||||| ||| || || |||    
T  51951979 gcaaaactatgagcgaattcattggcttgtcttcgaataaacctaacatcagaggttactaaatcagaagctaacaggcgtctacagtca-ttgattact 51951881  T
Q  439 gcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    ||||  ||||||||||| |||| ||| ||  |||||||||| || |||||| ||||||| ||||    
T  51951880 gcgcaaaaattagagaccccacttttcctgtcataaagactatccaccacacttttagaatcaa 51951817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 240 - 493
Target Start/End: Complemental strand, 13444262 - 13444007
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtag-agatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactct 338  Q
    |||||||||||||||||| ||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||  ||||||  |     
T  13444262 acaagaagaaacttattgtatttcattcataatgatagtaggagataaaagatggaatcctaatatgaatatggaaactagaatgacgtgaagccaaccg 13444163  T
Q  339 agcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataac 437  Q
    || |||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||| || |||||||||||||||| ||| ||||| ||    
T  13444162 aggaaagctatgagcgacttcgttgacttgtctccgaataaacctaacatcagtggttgctaaatcagaagctaacagacgtctacagtca-ttaattac 13444064  T
Q  438 tgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    |||||| |||||||||||||||| ||||||||||||| |||| || |||||| ||||    
T  13444063 tgcgctaaaattagagacgccacttttactaccataaggactatccaccacaatttt 13444007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 233 - 432
Target Start/End: Complemental strand, 39383602 - 39383402
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |    
T  39383602 ttttttgacaagaagaaacttattgcatttcattcataataatagtagagatacaaaatggaatcataatatgaatatggaaattaacatgacgcaaaac 39383503  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | || |||| || | |||||||||||||    
T  39383502 cactcgagcaaagctatgaacgacttcgttgacttgtctccgaataaacctaacatcagaggttattaaattagaagctaataggcatctacaatcattt 39383403  T
Q  432 a 432  Q
    |    
T  39383402 a 39383402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 21689887 - 21689628
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||| |||| ||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||    
T  21689887 tttttttacaggaagtaacttattgtatttcattcataataatagtagagatacaagatgaaatcataatatgaatatggaaactaacatgacgcaaagc 21689788  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||  |||| |||||||||| |||||||| |||| |||||||||||||||||||||| || | || ||||||  |||||||| ||| ||    
T  21689787 cactctagcaaagc--tgagtgacttcgttgacttgtctctgaataaacctaacatcagaggttactagattagaagctaacaagcgtctacattca-tt 21689691  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| |||||||||||| ||| |||||||||||||| ||| ||||||||||||||    
T  21689690 gattactgcgctaaaattagagacgtcacttttactaccataaaaactatctaccacagtttt 21689628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 233 - 404
Target Start/End: Complemental strand, 26400326 - 26400155
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |    
T  26400326 tttttttacaagaagaaacttattgcatttcattcataataatagtagagatacaatatggaatcataatatgaatatggaaactagcatgacgcgaaac 26400227  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc 404  Q
        |||||||| ||||||||||||| ||||||||||||  |||| |||||||||||||||||| |||||||    
T  26400226 tttcctagcaaaactatgagcgactttgttggcttgtctatgaataaacctaacatcagaggtttctaaatc 26400155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 362
Target Start/End: Complemental strand, 7622785 - 7622657
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||| || ||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||| ||||    
T  7622785 tttttttacaaaaaaaaatttattgcatttcatttataataatagtagagatacaagatgaaatcctaatatgaatatgaaaactagcat-acgcgaagc 7622687  T
Q  333 cactctagcaaagctatgagcgacttcgtt 362  Q
    |||  ||||||| |||| ||||| ||||||    
T  7622686 caccttagcaaatctataagcgatttcgtt 7622657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 39135533 - 39135498
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattca 268  Q
    |||||| |||||||||||||||||||||||||||||    
T  39135533 ttttttgacaagaagaaacttattgcatttcattca 39135498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 233 - 501
Target Start/End: Complemental strand, 25663655 - 25663386
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  25663655 tttttttacaagaagaaacttattgcatttcattcaaaataataggagagatacaagatggaatcctaatatgaatatggaaaatagcatgacgcaaatc 25663556  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  25663555 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 25663457  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  25663456 aataactgcgctaaaattagagacgccactagtactaccataaagactgtctaccacaattttagagtcaa 25663386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 240 - 498
Target Start/End: Complemental strand, 5839908 - 5839649
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||    
T  5839908 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatgaaattctaatattaatatggaaactagcatgacgcaaagccactcta 5839809  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataact 438  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  5839808 gcaaagctatgagcgacttcgttggcttgtctccaaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-ttaataact 5839710  T
Q  439 gcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagt 498  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5839709 gcgctaaaattagagacgccacttttactaccataaagactgtctaccacagttttggagt 5839649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 233 - 501
Target Start/End: Complemental strand, 32578201 - 32577918
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32578201 ttttttgacaagaataaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 32578102  T
Q  333 ca--------------ctctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagac 417  Q
    ||              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  32578101 cattctagcaaagccactctagcaaagctatgagcaacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagac 32578002  T
Q  418 gtctacaatcatttaataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  32578001 gtctacattca-ttaataactgcactaaaattagagacgccactagtactaccataaagactgtctaccacacttttggagtcaa 32577918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 233 - 405
Target Start/End: Original strand, 11503058 - 11503230
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11503058 ttttttgataagaagaaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 11503157  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 405  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503158 cactctagcgaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 11503230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 242 - 392
Target Start/End: Original strand, 32282841 - 32282991
Alignment:
Q  242 aagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagc 341  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||    
T  32282841 aagaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgatgcaaagtcactctagc 32282940  T
Q  342 aaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcaga 392  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32282941 aaagctatgagcgacttcgttggtttgtctccgaataaacctaacatcaga 32282991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 36531286 - 36531025
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |    
T  36531286 tttttttacaagaagagatttattgcatttcattcataataatagtagagaaacaagatggaatcctaatatgaatatggaaattagcatgacacaaaac 36531187  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat--caaatctaacagacgtctacaatcatt 430  Q
     | ||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||   ||| |||| | || ||| || ||| |    
T  36531186 tattctagcaaaactataagcgacttcgtttgcttgtctccgaataaacctaacatcagaggtttctaaataaaaaaactaa-atacatctgcagtca-t 36531089  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | || |||| ||| ||||||||||  |||| |||||||||||||||||| ||||||||||||||    
T  36531088 tgattactgtgctaaaattagagataccacttttactaccataaagactatctaccacagtttt 36531025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 40395387 - 40395245
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | ||||||||| |||||| ||||||||||  |||||||||||||||||||||  ||| |||||||||||||||||| || |||||||| || |    
T  40395387 tttttttataagaagaaatttattgtatttcattca--ataatagtagagatacaagataaaattctaatatgaatatggaaactaacatgacgcgaatc 40395290  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaat 377  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||    
T  40395289 cactctagcaaagctatgagtgacttagttgacttgtctccgaat 40395245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 10342497 - 10342353
Alignment:
Q  252 ttattgcatttcattcatga-taatagtagagatacaagatggaatcctaata---tgaatatggaaattagcatgacgcaaagccactctagcaaagct 347  Q
    |||||| ||||||||||| | |||||||||||||| |||||||||||||||||   |||||||| ||| ||||||||| |||||||| | ||||||||||    
T  10342497 ttattgtatttcattcattaataatagtagagatataagatggaatcctaataatatgaatatgaaaactagcatgacacaaagccattttagcaaagct 10342398  T
Q  348 atgagcgacttcgttggcttgtctccgaatgaacctaacatcaga 392  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||||    
T  10342397 atgagcgatttcgttggtttgtctccaaataaacctaacatcaga 10342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 240 - 430
Target Start/End: Original strand, 14219792 - 14219983
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    ||||||||||| |||||| |||||||| |  ||||||||||| ||  ||| || |||| ||||||||||||||||| || |||||| |  || ||||||     
T  14219792 acaagaagaaatttattgtatttcatttaaaataatagtagaaatgtaagctgaaatcttaatatgaatatggaaactaacatgacacggagtcactctg 14219891  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcatt 430  Q
    || ||  ||||| |||||| ||||| |||||||| ||| ||||||||||||||  |||||||||| ||| ||||||||||||||||||||||    
T  14219892 gcgaaattatgaccgactttgttggtttgtctcctaataaacctaacatcagatattactaaatcaaaagctaacagacgtctacaatcatt 14219983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 31037712 - 31037752
Alignment:
Q  256 tgcatttcattcatgataatagtagagatacaagatggaat 296  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  31037712 tgcatttcattcaaaataatagtagagatacaagatggaat 31037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 492
Target Start/End: Original strand, 32283005 - 32283053
Alignment:
Q  445 aaattagagacgccacttt-actaccataaagactgtctaccacagttt 492  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  32283005 aaattagagacgccacttttactgccataaagactatctaccacagttt 32283053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 32957588 - 32957327
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32957588 ttttttgacaagaagaaacttatcgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 32957489  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||    
T  32957488 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaatagacgtctacaatca-tt 32957390  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32957389 aataactgcgctaaaattagagacgccacttttactaccataaagactgtctaccacagtttt 32957327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 232 - 493
Target Start/End: Original strand, 7435604 - 7435866
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7435604 atttttttacaagaagaaatttattgcatttcgttcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaag 7435703  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||  |||||| |||||||| ||| |    
T  7435704 ccactctagcaaagctattagcgacttcgttgacttgtctccgaataaacctaacatcagaggttactaaatcagaagttaacaggcgtctacagtca-t 7435802  T
Q  431 taataactgcgctcaaattagagacgc-cactttactaccataaagactgtctaccacagtttt 493  Q
    | || ||| |||| |||||||||||||  | |||||| ||||||||||| ||||||||||||||    
T  7435803 tgattactacgctaaaattagagacgctaattttactgccataaagactatctaccacagtttt 7435866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 7597710 - 7597449
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| ||||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||    
T  7597710 tttttttacaagaagaaatttattgcttttcattcataataagagtagagatataagatggaatcctaatatgaatatgaaaactagcatcacgcaaagc 7597611  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat-caaatctaacagacgtctacaatcattt 431  Q
    |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||  ||| |||||| ||||||||| ||| ||    
T  7597610 cactctagcaaagctatgagcgactttggtggcttgtctccgaataaacctaacatcagaggttactaaataaaaaactaacatacgtctacagtca-tt 7597512  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| ||  |||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  7597511 gattactgcgctaaatctagagacgccacttttactgccataaagactctctaccacaatttt 7597449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 7608628 - 7608464
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  7608628 tttttttacaagaagaaatttattgcatttcattcataataatagtagagatacaagatggaattataatatgaatatggaaactagcatgacgcaaagc 7608529  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggtta 397  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||    
T  7608528 cactatagcaaagctatgagtgacttcgttggcttgtcttcgaataaacctaacatcaaaggtta 7608464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 6192681 - 6192539
Alignment:
Q  245 aagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaa 344  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||    
T  6192681 aagaaacttattgcatttcattcatgataatagtagaaatacaagatggaatcctaatatgaatatggaaactagcataacgtagagccactctagcaaa 6192582  T
Q  345 gctatgagcgacttcgttggcttgtctccgaatgaacctaaca 387  Q
    | |||||| || |||||||||||||||||||||||||||||||    
T  6192581 gatatgagtgatttcgttggcttgtctccgaatgaacctaaca 6192539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 232 - 430
Target Start/End: Complemental strand, 13406269 - 13406070
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| |||||||||| ||||||| |||||||| |  |||| |||||||||||| ||| ||||| |||||||| |||||||| ||||||||| | |||    
T  13406269 atttttttacaagaagaagcttattgtatttcatttaaaataagagtagagatacacgatcgaatcttaatatgattatggaaactagcatgactcgaag 13406170  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
     ||  |||||||| ||||||| |||||  ||||||||||||||||| ||| |||||||||||||| |||||||| || |||||| |||| ||| ||||||    
T  13406169 tcatcctagcaaaactatgagtgacttaattggcttgtctccgaataaacataacatcagaggttgctaaatcagaagctaacatacgtttactatcatt 13406070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 232 - 357
Target Start/End: Original strand, 34183109 - 34183234
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| | ||| ||||||||||||||||| |||||| ||| |||||||||||||||||| ||||| ||||| |||||| ||| || ||||||||||||    
T  34183109 attttttgataaggagaaacttattgcatttaattcataatagtagtagagatacaagatgaaatcccaatataaatatgaaaactaacatgacgcaaag 34183208  T
Q  332 ccactctagcaaagctatgagcgact 357  Q
    ||||||||||||||||||||||||||    
T  34183209 ccactctagcaaagctatgagcgact 34183234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 12523740 - 12523500
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||                     
T  12523740 tttttttacaagaagaaatttattgcatttcattcataataatggtagagatacaagatgaaatcctaatatgaatatggaaa----------------- 12523658  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
        |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||  ||  ||||| | || ||||||| |||||| | ||| ||    
T  12523657 ----ctagcaaaactatgagcaacttcgttggcttgtctccgaataaacctaacatcagattttgttaaattagaagctaacaggcgtctatagtca-tt 12523563  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| ||||||||||| ||||  ||||||||||| ||||| ||||||||||||||    
T  12523562 gatcactgcgctaaaattagagacaccacaattactaccatatagactatctaccacagtttt 12523500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 31797965 - 31798226
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||||| ||||| ||| ||||||||||| |||||| ||||||| |||||||||||||| |||||||||||  ||||| ||| ||| |||| |  ||||    
T  31797965 ttttttaataagaataaatttattgcattttattcataataatagcagagatacaagatgaaatcctaatatagatatgaaaactagaatgatgtgaagc 31798064  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcattt 431  Q
    |    |||||||  ||||||  |||||||| |||||||| | ||| |||||||||||||||||||||| ||| ||| |||||| | ||||||| || ||     
T  31798065 cgtcatagcaaatttatgagtaacttcgttagcttgtcttcaaataaacctaacatcagaggttactagatcaaaagctaacatatgtctacagtc-ttg 31798163  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    ||| ||||| || |||||||||| | ||| ||||| |||||||||||| || || ||||||||    
T  31798164 aatcactgcactaaaattagagatgtcacatttaccaccataaagactatccactacagtttt 31798226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 29025240 - 29025306
Alignment:
Q  248 aaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaa 314  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||||||||||    
T  29025240 aaacttattgcatttcattcataataatagtagtgatacaagatgaaatcttaatacgaatatggaa 29025306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 6192544 - 6192479
Alignment:
Q  409 ctaacagacgtctacaatcatttaataactgcgctcaaattagagacgccac-tttactaccataaa 474  Q
    |||||||| ||| ||||||||| | |||||||||| |||||||||||||||| ||||||||||||||    
T  6192544 ctaacagatgtccacaatcatt-attaactgcgctaaaattagagacgccacttttactaccataaa 6192479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 7607831 - 7607777
Alignment:
Q  440 cgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    |||| |||||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  7607831 cgctaaaattagagacgccacttttactacaataaagactatctaccacaatttt 7607777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 32814131 - 32814074
Alignment:
Q  346 ctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat 403  Q
    |||| ||||||||  || |||||||| ||||| ||||||||||||||| |||||||||    
T  32814131 ctataagcgactttattagcttgtcttcgaataaacctaacatcagagattactaaat 32814074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 233 - 501
Target Start/End: Complemental strand, 23362439 - 23362170
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23362439 tttttttacaagaagaaatttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 23362340  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||    
T  23362339 cactctagcaaagctatgagcgactttgttggcttgtctccgaatgaaccttacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 23362241  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  23362240 aataactgcgctaaaattagagacaccacttttcctaccataaagactgtctaccacagttttggagtcaa 23362170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 25611352 - 25611621
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25611352 ttttttgacaaaaataaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 25611451  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| ||    
T  25611452 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacattca-tt 25611550  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  25611551 aataactgcgctaaaattagagacgccactagtactaccataaagactgtctaccacacttttggagtcaa 25611621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 499
Target Start/End: Original strand, 3962283 - 3962550
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  3962283 tttttttataagaagaagcttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatacgaatatggaaactagcatgacgcaaagc 3962382  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| ||    
T  3962383 cactctagcaaagctatgagcaacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacatctacaatca-tt 3962481  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtc 499  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  3962482 aataactgcgctaaaattagagacgccactattactaccataaagactgtctaccacaattttggagtc 3962550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 233 - 488
Target Start/End: Complemental strand, 14160614 - 14160358
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||    
T  14160614 ttttttgacaagaagaaacttattgcatttcattcaaaataatagtagagatacaagaaggaatcctaatatgaatacgcaaactagcatgacgcaaagc 14160515  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  14160514 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 14160416  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccaca 488  Q
    ||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  14160415 aataattgcgctaaaattagagacgccactagtactaccataaagactgtctaccaca 14160358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 233 - 501
Target Start/End: Complemental strand, 30466820 - 30466549
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatga--taatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaa 330  Q
    |||||| |||| ||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  30466820 ttttttgacaaaaagaaacttattgcatttcattcaaaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcataacgcaaa 30466721  T
Q  331 gccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcat 429  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||     
T  30466720 gccactctagcaaaactatgagcgacttcgttggcttgtctccgaatgaacctaacttcagaggttactatatcagaagctaacagacgtctacaatca- 30466622  T
Q  430 ttaataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  30466621 ttaataactgcgctaaaattagagacgccacttttactatcataaagactgtctaccacagttttggagtcaa 30466549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 232 - 493
Target Start/End: Complemental strand, 9360893 - 9360631
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  9360893 atttttttacaagaagaaacttattgtatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaa 9360794  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    | ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||| |||||||| ||| |    
T  9360793 ctactctagcaaaactatgatcgacttcgttggcttgtctccgaataaacctaacatcagaggttactaaaacagaagctaacaggcgtctacagtca-t 9360695  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | || |||||||| |||||||| ||||||| |||||| ||||||||||| |||| |||| ||||    
T  9360694 tgattactgcgctaaaattagaaacgccacttttactgccataaagactatctatcacattttt 9360631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 240 - 493
Target Start/End: Original strand, 4595026 - 4595280
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||| ||||||||    
T  4595026 acaagaataaacttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaactagcatgacagaaaaccactcta 4595125  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataact 438  Q
    ||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| || |||||||||||||||| ||| || || | |    
T  4595126 gcaaaactatgagcgacttcgttggtttgtctccgaacaaacctaacatcagaggttactaaatcagaagctaacagacgtctacagtca-ttgattatt 4595224  T
Q  439 gcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    ||||| |||||||||||||||| ||| || ||||||||||| | ||||||| ||||    
T  4595225 gcgcttaaattagagacgccacattttctgccataaagactatataccacaatttt 4595280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 233 - 405
Target Start/End: Original strand, 8150844 - 8151016
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||     
T  8150844 tttttttacaagaagaaacttattacatttcattcataataatagtagagatacaagatggaatcctaatatgaatttggaaactagtatgacgcaaagt 8150943  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 405  Q
    ||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  8150944 cacgctagcaaaactatgagcgacttcgtttgcttgtctccgaataaacctaacatcagaggttactaaatca 8151016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 40187509 - 40187247
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |    
T  40187509 tttttttacaagaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatgaaaactagcaagacgcaaaac 40187410  T
Q  333 cactctagc-aaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    ||||||| | ||| ||||||| |  ||||||||||||||||| ||| |||||||||||| |||||||||||||| ||  |||||  |||||||| ||| |    
T  40187409 cactctaacaaaaactatgagtgttttcgttggcttgtctccaaataaacctaacatcaaaggttactaaatcagaagttaacaagcgtctacagtca-t 40187311  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | || |||||||| |||||||||||||||| |||| | ||||||||||| ||||||||| ||||    
T  40187310 tgattactgcgctaaaattagagacgccacttttattgccataaagactatctaccacaatttt 40187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 42852118 - 42851854
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagta---gagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaa 329  Q
    |||||| ||||||||||||||||| |||||||||||| |||||| ||   |||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  42852118 tttttttacaagaagaaacttattccatttcattcataataataataatagagatataagatggaatcctaatatgaatatggaaactaacatgacgcaa 42852019  T
Q  330 agccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatca 428  Q
    ||||||  ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| || ||||||  |||||||| |||    
T  42852018 agccacgttagcaaaactatgagcgacttcgttggattgtctccgaataaacctaacatcagaggttactaagtcagaagctaacacgcgtctacagtca 42851919  T
Q  429 tttaataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || || ||||| || |||||||| ||||||| |||| ||||||||||||| |||||||| |||||    
T  42851918 -ttgattactgcactaaaattagatacgccacttttaataccataaagactatctaccacggtttt 42851854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 275 - 440
Target Start/End: Original strand, 28423910 - 28424075
Alignment:
Q  275 tagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtctccg 374  Q
    |||| ||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28423910 tagttgagatacaagatggaattctgatatgaatatggaaactagcatgatgcaaagccactctagcgaagctatgagcgacttcgttggcttgtctccg 28424009  T
Q  375 aatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgc 440  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||    
T  28424010 aatgaacctaacatcagaggttactaaatcagaagctaacagaagtctacaatca-ttaataactgc 28424075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 233 - 430
Target Start/End: Complemental strand, 9026711 - 9026516
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | ||||||||||||||| |||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  9026711 tttttttataagaagaaacttatttcatttcattcataataatag---agatacaagatggaatcttaatatgaatatggaaattagcatgacgcaaatc 9026615  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    |||||||||||| |||||||||||||||||| |||||||| |||| |||||||||||| | |||||||||||| || ||||| | ||||||||||||||    
T  9026614 cactctagcaaaactatgagcgacttcgttgacttgtctctgaataaacctaacatcataagttactaaatcagaagctaaccggcgtctacaatcatt 9026516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 5866365 - 5866208
Alignment:
Q  235 ttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagcca 334  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||    
T  5866365 tttttacaagaagaaatttattgcatttcattcataataatagtagagatacaagatgaaatcctaatatgaatatggaaattaacatgacacgaagcca 5866266  T
Q  335 ctctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcaga 392  Q
    |||||| |||||||||||| | || ||| |||||||||||||| ||||||||||||||    
T  5866265 ctctaggaaagctatgagcaattttgtttgcttgtctccgaataaacctaacatcaga 5866208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 6596296 - 6596171
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  6596296 ttttttgacaagaagaaacttattgcatttcattcaaaataatagtagatatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaaac 6596197  T
Q  333 cactctagcaaagctatgagcgactt 358  Q
    ||||||| |||| ||||||| |||||    
T  6596196 cactctaacaaaactatgagtgactt 6596171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 294 - 493
Target Start/End: Original strand, 24267772 - 24267972
Alignment:
Q  294 aatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagag 393  Q
    |||||||| || |||||||||| || |||||||||||| ||  |||||||| |||||||||||||| ||| |||||||| |||| |||||||||| ||||    
T  24267772 aatcctaacataaatatggaaactaacatgacgcaaagtcatcctagcaaaactatgagcgacttcattgacttgtctctgaataaacctaacattagag 24267871  T
Q  394 gttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtt 491  Q
    |||||||||||| || ||||||  |||||||||||| ||||| |||||||| |||||||||||||||| ||||| |||||||||||| || |||||| ||    
T  24267872 gttactaaatcagaaactaacaagcgtctacaatca-ttaattactgcgctaaaattagagacgccacttttaccaccataaagactatccaccacaatt 24267970  T
Q  492 tt 493  Q
    ||    
T  24267971 tt 24267972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 233 - 393
Target Start/End: Complemental strand, 35827717 - 35827557
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | ||||||||| ||||||||||| ||| || |||  |  |||||||||||||| |||| |||||||||||||||||||||||||||   || |    
T  35827717 ttttttgaaaagaagaaatttattgcattttatttataatataaagagagatacaagatgaaatcttaatatgaatatggaaattagcatgacatgaatc 35827618  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagag 393  Q
    || |||||||||||||||||| |||| || |||||||||| |||| |||||||||| ||||    
T  35827617 cattctagcaaagctatgagcaactttgtaggcttgtctcagaataaacctaacataagag 35827557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 405
Target Start/End: Complemental strand, 2405321 - 2405150
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||| |||||||| || ||||||  ||||||| ||||||||||| |||||| |||| | ||| ||||||||| || |||    
T  2405321 tttttttacaagaaaaaacttattgtatttcatttataataatatgagagatataagatggaatcttaatataaatacgaaaactagcatgacacagagc 2405222  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 405  Q
    ||||| ||| || | || |  |||||||||| | ||||||| ||| | |||||||||| ||||||||||||||    
T  2405221 cactcgagcgaaacaataaatgacttcgttgacatgtctcctaataaccctaacatca-aggttactaaatca 2405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 377
Target Start/End: Original strand, 21946913 - 21947050
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||||||| ||||||||| || ||||||||||| ||||||||||  ||| ||||||       | || || ||||| ||||||     
T  21946913 tttttttacaagaagaaacttattccatttcatttataataatagtagatatacaagatgagatcttaatat-------ggaactaacatgatgcaaagt 21947005  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaat 377  Q
    ||  |||||||| ||||||||||||| ||||||||||||||||||    
T  21947006 catcctagcaaaactatgagcgactttgttggcttgtctccgaat 21947050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 33336091 - 33336178
Alignment:
Q  318 agcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 405  Q
    |||||||||| ||||||| ||||||||  ||||||| |||||||||||||||||| |||| ||||||| |  ||||||| ||||||||    
T  33336091 agcatgacgcgaagccaccctagcaaacttatgagcaacttcgttggcttgtctctgaataaacctaatactagaggttgctaaatca 33336178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 12152727 - 12152659
Alignment:
Q  345 gctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcaaatctaac 413  Q
    |||||||||||||| ||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||    
T  12152727 gctatgagcgactttgtttgtttgcctccgaataaacctaacagcagatgttactaattcaaatctaac 12152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 12152836 - 12152752
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcct-aatatgaatatggaaa 315  Q
    ||||||| |||||| |||| ||||||||||||||| |  ||||||||||||||| | ||||||||| | ||||| ||||||||||    
T  12152836 atttttttacaagatgaaatttattgcatttcatttaaaataatagtagagatatacgatggaatcttaaatatcaatatggaaa 12152752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 501
Target Start/End: Complemental strand, 5866170 - 5866113
Alignment:
Q  445 aaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||||||| |||||||||||||||| | ||||||||| ||||||| ||||    
T  5866170 aaattagagacgccacatttactaccataaagattatctaccacaattttagaatcaa 5866113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 9609491 - 9609760
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  9609491 ttttttgacaagaagaaacttattgcatttcatacaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgatgcaaagc 9609590  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  9609591 cactctagcgaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 9609689  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  9609690 aataactgcgctaaaattagagacgccactagtactaccataaagactgtctaccacaattttggagtcaa 9609760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 234 - 501
Target Start/End: Original strand, 30796788 - 30797056
Alignment:
Q  234 tttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagcc 333  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  30796788 ttttttacaagaagaaacttattgcatttcattcaaaataatagtagagatgcaagatggaatcctaatatgaatatggaaactagcaagacgcaaagcc 30796887  T
Q  334 actctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattta 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||    
T  30796888 actctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcataagctaatagacgtctacaatca-tta 30796986  T
Q  433 ataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  30796987 ataactgcgctaaaattagagacgccactagtactaccataaagactgtctaccacaattttggagtcaa 30797056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 29242097 - 29242366
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||    
T  29242097 tttttttacaagaagaaacttattgcatttcattcaaaataatagtagagatacaatatggaatcctaatataaatatggaaactagcatgatgtaaagc 29242196  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||    
T  29242197 cactctagcaaagctatgagcgacttcattggcttgtctccgaatgaacctaacatcagaggttactaagtcagaagctaacagacgtctacaatca-tt 29242295  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  29242296 aatatctgcgctaaaattagagacgccacttttactaccataaagactgtctaccatagttttggagtcaa 29242366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 246 - 515
Target Start/End: Complemental strand, 1722108 - 1721839
Alignment:
Q  246 agaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaag 345  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||| ||||||||||||| ||     
T  1722108 agaaacttattgcatttctttcataataataatagagatacaagatgaaattttaatatgaatatggaaactagcatgacgcgaagccactctagccaaa 1722009  T
Q  346 ctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctc 444  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||  |||||| ||| |||||||| || || ||||||||     
T  1722008 ctatgagcgacttcgttggcttgtctccaaataaacctaacatcagaggttactaaatcataagttaacaggcgtttacaatca-ttgatcactgcgcta 1721910  T
Q  445 aaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
    |||||| ||||||||| |||  ||||||||||||| ||||||||||| || || || || ||||||||||||    
T  1721909 aaattaaagacgccacatttcttaccataaagactatctaccacagtcttggaatc-aagctcaaaatccac 1721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 233 - 385
Target Start/End: Complemental strand, 39861076 - 39860924
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||    
T  39861076 tttttttacaagaaaaaacttattgcatttctttcataataatagtagagatacaagattgaatcataatatgaatatggaaactagcatgacgcgaagc 39860977  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaa 385  Q
    ||| ||||||||  ||||||||||||| ||||||||||||||||| |||||||    
T  39860976 caccctagcaaaattatgagcgacttccttggcttgtctccgaataaacctaa 39860924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 36978857 - 36978727
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| || |    
T  36978857 tttttttacaagaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatataaatatgaaaactagcatgacgcgaaac 36978758  T
Q  333 cact---ctagcaaagctatgagcgacttcg 360  Q
    ||||    || ||||||||||||||||||||    
T  36978757 cacttaattaacaaagctatgagcgacttcg 36978727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 4052992 - 4052904
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagca 321  Q
    |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  4052992 tttttttacaagaaaaaatttattgcatttcattcataataatggtagagatataagatggaatcctaaaatgaatatggaaactagca 4052904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 360 - 489
Target Start/End: Original strand, 27452586 - 27452715
Alignment:
Q  360 gttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattagagacgcc 458  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||  ||||||||||| || || | |||||| ||||||||||||||    
T  27452586 gttggcttatctccgaataaacctaacatcagaggttactaaatcataagctaacag-tgtctacaatca-ttgattattgcgctaaaattagagacgcc 27452683  T
Q  459 actt-tactaccataaagactgtctaccacag 489  Q
    |||| |||| ||||||||||| || |||||||    
T  27452684 acttctactgccataaagactatccaccacag 27452715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 16007121 - 16007185
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatc 297  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16007121 ttttttgacaagaagaaacttattgcatttcattcataataatagtagagatacaagatgaaatc 16007185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 4052909 - 4052843
Alignment:
Q  337 ctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat 403  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  4052909 ctagcaaaactatgagcaacttcgttggtttgtctccgaataaacctaacatcagaggttgctaaat 4052843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 27452472 - 27452582
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgata------------atagtagagatacaagatggaatcctaatatgaatatggaaattagc 320  Q
    |||||||||||||||||| |||||||||||||||||| |||            ||| ||||||||||||||| ||| |||||||||||||||||| ||||    
T  27452472 ttttttaacaagaagaaatttattgcatttcattcataataataataataattataatagagatacaagatgaaattctaatatgaatatggaaactagc 27452571  T
Q  321 atgacgcaaag 331  Q
    || || |||||    
T  27452572 ataacacaaag 27452582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 40109333 - 40109287
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagta 279  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||    
T  40109333 ttttttgacaagaagaaatttattgcatttcattcataataatagta 40109287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 233 - 501
Target Start/End: Complemental strand, 187276 - 187007
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  187276 tttttttacaagaagaaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 187177  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||    
T  187176 cactatagcaaagctatgagcgaattcgttggcttgtctccgaatgaacctaacattagaggttactaaatcagaagctaacagacgtctacaatca-tt 187078  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    ||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  187077 aataattgcgctaaaattagagacgccactagtactaccataaagactgtctaccacacttttggagtcaa 187007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 26429181 - 26429450
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26429181 ttttttgacaagaagaaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 26429280  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  26429281 cactctagcaaagctatgagcgactttgttggcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 26429379  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||||| |||||| ||||||||||  |||||||||||||||||| ||||| | |||| |||||||    
T  26429380 aataactgcgctaaaattaaagacgccactagtactaccataaagactgtttaccataattttggagtcaa 26429450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 515
Target Start/End: Complemental strand, 35853309 - 35853027
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35853309 ttttttgacaagaagaaacttattgcatttaattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 35853210  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||  |    
T  35853209 cactctagcaaaactatgagcgacttcgttgacttgtctccgaatgaacctaacatcagaggttattaaatcagaagctaacagaagtctacaatca-ct 35853111  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  35853110 aataactgcgctaaaattagagatgccacttttactaccataaagactgtctaccacagttttggagtc-aaactcaaagtccac 35853027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 232 - 493
Target Start/End: Original strand, 17423810 - 17424072
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||    
T  17423810 attttttgacaagaagaaacttattgaatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgactcgaag 17423909  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| | |||||| || ||||||  |||||||| ||| |    
T  17423910 ccactctagcaaagctatgagcaacttcgttggcttgtctccgaataaacctaacatcataggttgccaaatcagaagctaacatgcgtctacagtca-t 17424008  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | || |||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  17424009 tgatcactgcgctaaaattagagacgccacaattactaccatagagactatctaccacagtttt 17424072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 232 - 493
Target Start/End: Complemental strand, 48446797 - 48446535
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||    
T  48446797 atttttttacaagaagaaatttattgtatttcattcataataatagtagagatataagatggaaccataatatgaatatggaaactagcatgacgcaaag 48446698  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcatt 430  Q
     ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||  ||| |    
T  48446697 tcactctagcaaagctatgagcaacttcgttggcttgtctccgaataaacctaacatcagaggttactaaatctgaagctaacagacgtctaccgtca-t 48446599  T
Q  431 taataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | || |||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  48446598 tgattactgcgctaaaattagagacgccacttttactgccataaagactatctaccacagtttt 48446535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 2536968 - 2537229
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||     
T  2536968 ttttttgacaagaagaaacttattgcattttattcataataatagtagagatacaagatggaatcctaacatgaatatggaaactagcatgacgcaaagt 2537067  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||  |||||||| ||| ||    
T  2537068 cactctagcaaagttataagagacttcgttggcttgtctccgaataaacctaacatcagaggttactaaatcagaagctaacatgcgtctacagtca-tt 2537166  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || ||||| || |||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  2537167 gattactgcactaaaattagagacgccacttttactgccataaagactatctaccacagtttt 2537229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 233 - 502
Target Start/End: Original strand, 52759116 - 52759386
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||    
T  52759116 tttttttacaagaagaaacttattgcatttcattcataataatagtatagatacacgatggaatcataatatgaatatggaaactagcatgacacaaagc 52759215  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||  |||||||||||| ||    
T  52759216 cactctaacaaaactatgagcgacttcgttggcttgtctccgaataaacctaacatcagaggttactaaatcataagctaacatgcgtctacaatca-tt 52759314  T
Q  432 aataactgcgctcaaattagagacgcca-ctttactaccataaagactgtctaccacagttttagagtcaaa 502  Q
     || |||||||| |||||||||||||||  |||| ||||||||||||| |||| ||| ||||| || |||||    
T  52759315 gattactgcgctaaaattagagacgccagttttaataccataaagactatctatcacggttttggaatcaaa 52759386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 26006074 - 26006335
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26006074 tttttttacaagaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 26006173  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| || |||||||  ||||||| ||| ||    
T  26006174 cactcaagcaaaactatgagcgacttcgttggcttgtctctgaataaacctaacatcagaagttactacatcagaagctaacaggggtctacagtca-tt 26006272  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||| | | |||||||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  26006273 gattactgtgataaaattagagacgccacttttactgccataaagactatctaccacattttt 26006335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 233 - 486
Target Start/End: Complemental strand, 33846458 - 33846204
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| | |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33846458 tttttttataagaagaaacttattgcatttcattcagaataatagtagaaatacaagatggaatcctaatgtgaatatggaaactagcatgacgcaaagc 33846359  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| || |||||| ||||||| | ||| ||    
T  33846358 cactctagcaaagctatgagcgacttcgttggcttgtctccgaataaacctaacaccagaggttaccaaatcagaagctaacaaacgtctatagtca-tt 33846260  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctacca 486  Q
     || |||||||| |||||||| | ||||| |||||| ||||||||||| |||||||    
T  33846259 gattactgcgctaaaattagatatgccacttttactgccataaagactatctacca 33846204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 9035035 - 9034787
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9035035 tttttttacgagaagaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 9034936  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||             ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||||| ||    
T  9034935 cac-------------tgaccgacttcgttggcttgtctccgaataaacctaacatcagaggttactaaatcagaagctaacagacatctacaatca-tt 9034850  T
Q  432 aataactgcgctcaaattagagacgccact-ttactaccataaagactgtctaccacagtttt 493  Q
    |||||||||||| |||||||| |||||| | ||||||||||||||||| ||||||||| ||||    
T  9034849 aataactgcgctaaaattagaaacgccaatattactaccataaagactatctaccacaatttt 9034787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 12274330 - 12274069
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| || |||||| |||||     
T  12274330 tttttttacaagaaaaaacttattgcatttcattcataataatagtagagatacaagatggaatcctaatataaatatagaaactaacatgacacaaagt 12274231  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
     ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||  | |||||| ||| ||    
T  12274230 tactctagcaaagctaagagcgacttcgttggcttatctccgaataaacctaacatcagaggttactaaatcagaagctaacaagcatctacagtca-tt 12274132  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| |||||||||  ||||| |||||||||||||||||| ||  ||||||||||    
T  12274131 gattactgcgctgaaattagaggtgccacttttactaccataaagactatcagccacagtttt 12274069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 233 - 476
Target Start/End: Original strand, 25058293 - 25058537
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||||| |  |||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||    
T  25058293 tttttttacaagaagaaacttactatattttattcataataatagtagagatacaagattgaatcttaatatgaatatggaaactaacatgacgcgaagc 25058392  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    || |||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| || |||||||||||||||||||| ||    
T  25058393 cagtctaacaaaactatgagcgacttcgttggcttgtctccaaataaacctaacatcagatgttactaaatcagaagctaacagacgtctacaatca-tt 25058491  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaaga 476  Q
    ||| |||||||| |||||||| | |  || ||||||||||||||||    
T  25058492 aattactgcgctaaaattagatatgttacttttactaccataaaga 25058537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 240 - 493
Target Start/End: Original strand, 8169321 - 8169574
Alignment:
Q  240 acaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactcta 339  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||||||  |||| ||||||||||| ||||||  |||    
T  8169321 acaagaagaaacttattgcatt-cattcataataatagtagagatataaggtggaattctaatatgaataatgaaactagcatgacgcgaagccatccta 8169419  T
Q  340 gcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataact 438  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||  | |||||||||| ||||| | |    
T  8169420 gcaaagctatgagcgacttcgttggcttgtctccgaataaacctaacatcagaggttactaaatcagaagctaacatgcatctacaatca-ttaattaat 8169518  T
Q  439 gcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    ||||| |||| | |||| |||| |||||||||||||||| | ||  ||||||||||    
T  8169519 gcgctaaaataaaagacaccacttttactaccataaagattatccgccacagtttt 8169574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 54552755 - 54552495
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||| || |||||||||||||||||||||| ||||||| | |||||||||| |||||||| ||||||||||| ||  ||||||||||||||||    
T  54552755 tttttttacaacaaaaaacttattgcatttcattcataataatagcaaagatacaagaaggaatcctgatatgaatatgaaatctagcatgacgcaaagc 54552656  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||  ||| || ||| |||||||||||    
T  54552655 cactctagcaaagctatgaccgacttcgttagcttgtatccgaataaacctaacatcagaggttactaaatcagaagttaataggcgtatacaatcattt 54552556  T
Q  432 aataactgcgctcaaattagagacgcca-ctttactaccataaagactgtctaccacagtttt 493  Q
     || ||| |||| ||| |||||| ||||  |||||||||||||||||| ||||| ||| ||||    
T  54552555 -attactacgct-aaaatagagatgccatttttactaccataaagactatctacgacaatttt 54552495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 22359230 - 22359490
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  22359230 ttttttacaaagaacaaacttattgcatttcattcataataatagtagagatacaagatggaatcttaatatgaatatggaaactagcatgacacaaagc 22359329  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||  |||||| ||||||| |||||||||||||||| | ||||| || | |||||||||| ||||||||||| || ||||||| | || ||||| | ||    
T  22359330 cactaaagcaaaactatgagtgacttcgttggcttgtattcgaat-aaacaaacatcagagattactaaatcagaagctaacaggcatcgacaat-aatt 22359427  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||| ||| |||||||||||| ||| ||||||   ||||||||| | ||||||||||||    
T  22359428 gattactgtgctaaaattagagacgtcacttttactgttataaagactatataccacagtttt 22359490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 243 - 478
Target Start/End: Original strand, 19396165 - 19396401
Alignment:
Q  243 agaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagca 342  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||| || ||| ||| |||||||||||||||  |||||    
T  19396165 agaaaaaacttattgcatttcattcataataatagtagagatacaagatacaatcttaatatgaatgtgaaaactagtatgacgcaaagccaccatagca 19396264  T
Q  343 aagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcg 441  Q
    || |||| ||||||||  ||||||||||||||||| |||||||||||| |||||||||||||| || |||||| || | |||||| |||| || | |||     
T  19396265 aaactataagcgactttattggcttgtctccgaataaacctaacatcaaaggttactaaatcagaagctaacaaacatttacaattattt-attattgca 19396363  T
Q  442 ctcaaattagagacgccac-tttactaccataaagact 478  Q
    ||  ||||||||||| ||| ||||| ||||||||||||    
T  19396364 ctataattagagacgacacttttacaaccataaagact 19396401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 233 - 493
Target Start/End: Complemental strand, 792073 - 791834
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||                     
T  792073 tttttttacaagaagaaatttattgcatttcattcataataat-gtagagatataagatggaatcctaatatgaatatggaaa----------------- 791992  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
        |||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||| | || |||||||||||||||||||| ||    
T  791991 ----ctagcaaaactatgagcaacttcgttggtttgtctccgaataaacctaacatcagaggttgctaaattagaagctaacagacgtctacaatca-tt 791897  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| ||||||||||| ||||  ||||||||||| ||||| ||||||||||||||    
T  791896 gatcactgcgctaaaattagagacaccacaattactaccatatagactatctaccacagtttt 791834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 23860011 - 23860121
Alignment:
Q  263 cattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgtt 362  Q
    ||||||| ||| |||||||||||| ||||| |||| ||||||||||||| ||||||  |||| |||||  |||||||| |||||||||||||| ||||||    
T  23860011 cattcattatagtagtagagatacgagatgaaatcgtaatatgaatatgaaaattattatgatgcaaaatcactctagtaaagctatgagcgatttcgtt 23860110  T
Q  363 ggcttgtctcc 373  Q
    | ||| |||||    
T  23860111 gacttatctcc 23860121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 515
Target Start/End: Complemental strand, 6863 - 6581
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6863 tttttttacaagaataaacttattgcatttcattcaaaataatagtagagatacaagatggaatcctaatatgaatatggaaactagcatgacgcaaagc 6764  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||| ||    
T  6763 cgctctagcaaagctatgagcgacttcgttgtcttgtctccgaatgaacctaacatcagaggttactaaatcagaagctaatagacgtttacaatca-tt 6665  T
Q  432 aataactgcgctcaaattagagacgcca-ctttactaccataaagactgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
    |||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||    
T  6664 aataactgcgctaaaattagagacgccatttttactaccataaaggctgtctaccacagttttggagtc-aaactcaaagtccac 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 2188 - 2457
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||     
T  2188 tttttttacaagaataaacttcttgcatttcattcataataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgacgcaaagt 2287  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  2288 cactctagcaaagctatgagcgacttcgttggcttgtctgcgaatgaacctaacatcagaggttactaaatcagaagctaacagacgtctacaatca-tt 2386  T
Q  432 aataactgcgctcaaattagagacgcca-ctttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    |||||| | ||| |||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||    
T  2387 aataaccgtgctaaaattagagacgccatttttactaccataaagattgtctaccacagttttggagtcaa 2457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 243 - 501
Target Start/End: Complemental strand, 5431 - 5172
Alignment:
Q  243 agaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagca 342  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||| |||| |||||    
T  5431 agaagaaacttattgcatttcattcataataatagtagagatacaagatggaattttaatatgaatatggaaattagcatgatgcaaagtcactatagca 5332  T
Q  343 aagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcatttaataactgcg 441  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  5331 aagttatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcaaaagctaacaggcgtctacaatca-ttaataactgcg 5233  T
Q  442 ctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
     | ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||    
T  5232 ttaaaattagagacgctacttttactaccataaagactgtctaccacagttttggagtcaa 5172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 23769764 - 23770025
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||   ||||||    
T  23769764 tttttttacaagaacaaacttattgcatttcattcataataatagtagagatacaagatagaattctaatatgaatatggaaactagcatgtaacaaagc 23769863  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatc-aaatctaacagacgtctacaatcattt 431  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  || |||||||||||||||||||| ||    
T  23769864 tactctagcaaagctatgagcgacttcgttggcttgtctccgaataaacctaacatcagaggttactaattctgaagctaacagacgtctacaatca-tt 23769962  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  23769963 gattactgcgctaaaattagagacgccacttttactgccataaagactatctaccacagtttt 23770025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 24477465 - 24477726
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||    
T  24477465 ttttttgacaagaagaaacttattgcatttcattcatcataatagtagagatataagatggaatcctaatatgaatatgaaaactagcataacgcaaagc 24477564  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || ||||||  | |||||| ||| ||    
T  24477565 cactctagcaaaactatgagcgacttcgttggtttatctccgaataaacctaacatcagaggttactaaatcagaagctaacatgcatctacagtca-tt 24477663  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
     || |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24477664 cattactgcgctaaaattagagacgccacttttactaccataaagactatctaccacagtttt 24477726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 236 - 488
Target Start/End: Original strand, 45085977 - 45086230
Alignment:
Q  236 tttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccac 335  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  45085977 tttaacaagaagaaacttatttcatttcattcataataatagtagagatataagatggaatcctaatatgaatatggaaactagcatgacgcgaagccac 45086076  T
Q  336 tctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaat 434  Q
    |||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| ||| |||||||| || ||    
T  45086077 tctagccaagctatgagcgactttgttggcttgtctccgaataaacctaacatcagaggttactaaatcataagctaacagtcgtttacaatca-ttgat 45086175  T
Q  435 aactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccaca 488  Q
     || ||||| |||||||||||||||| ||| |||||||||||||| |||||||||    
T  45086176 cacggcgctaaaattagagacgccacatttgctaccataaagactatctaccaca 45086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 233 - 463
Target Start/End: Complemental strand, 22606068 - 22605838
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |    
T  22606068 ttttttgacaagaagaaactgattgcatttcattcataataattgtagagatacaagatggaatcctaatatgaatatgaaaactagcatgacgcaaaac 22605969  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    |||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||    
T  22605968 cactctcgcaaagctatgagcgactccgttggcttgtctctgattgaacctaacatcagaggttactaaatcagaagctaacagacgactacaatca-tt 22605870  T
Q  432 aataactgcgctcaaattagagacgccacttt 463  Q
    ||||||| |||  |||||||||||||||||||    
T  22605869 aataactacgcaaaaattagagacgccacttt 22605838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 253 - 493
Target Start/End: Complemental strand, 10213948 - 10213707
Alignment:
Q  253 tattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgag 352  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||    
T  10213948 tattgcatttcattcataataatagtagagatacaagatgaaatcttaatatgaatatggaaactagcatgacgcgaagccaccctagcaaaactatgag 10213849  T
Q  353 cgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattag 451  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||  |||||||||||| ||| | |||||||| |||||||    
T  10213848 cgacttcgttggtttgtctccgaataaacctaacatcagaggttactaaatcagaagctaacaagcgtctacaatca-ttagttactgcgctaaaattag 10213750  T
Q  452 agacgccac-tttactaccataaagactgtctaccacagtttt 493  Q
    | ||||||| |||||||||||||||||| || |||||||||||    
T  10213749 atacgccacttttactaccataaagactatccaccacagtttt 10213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 233 - 475
Target Start/End: Original strand, 38451682 - 38451924
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| |||||||  |||||||    
T  38451682 tttttttacaagaagaaacttattgcatttcattcataataatagta-agatacaagatgaaattctaatatgaatatggaaactagcatggtgcaaagc 38451780  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||| ||||||| || ||||||| |||||||| ||| ||    
T  38451781 cactctagcaaagctatgagcgatttcgttggcttgtctccgaaaaaacctaacattagaggttaataaatcagaagctaacaggcgtctacagtca-tt 38451879  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaag 475  Q
     || | |||||| |||||||||||||||| |||||||||||||||    
T  38451880 gattattgcgctaaaattagagacgccacttttactaccataaag 38451924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 233 - 501
Target Start/End: Original strand, 23407738 - 23408007
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||     
T  23407738 tttttttacaagaagaaatttattgcatttcgttcataataatagtagagatataagatggaatcttaatatgaatatggaaactagcatgatgcgaaga 23407837  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||  ||| |||| ||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||| || ||||||  |||||||||||| ||    
T  23407838 catcctaacaaaactatgagcgactttgtttgcttgtctccgaataaacctaacattagaggttactaaatcagaagctaacatgcgtctacaatca-tt 23407936  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaa 501  Q
    ||| |||   || |||||||||||| ||| ||||||| |||||||||| || |||||||||||||| ||||    
T  23407937 aattactaaactaaaattagagacgtcacttttactatcataaagactatccaccacagttttagaatcaa 23408007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 11616781 - 11616661
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||     
T  11616781 ttttttgacaagaagaaacttattgcatttcattcaaaataatagtagagatacaagatagaatcctaatatgaatatggaaactagcatgacgtaaagt 11616682  T
Q  333 cactctagcaaagctatgagc 353  Q
    |||||||||||||||||||||    
T  11616681 cactctagcaaagctatgagc 11616661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 31411362 - 31411483
Alignment:
Q  241 caagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctag 340  Q
    ||||||||||||||||| ||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||| ||||| ||||| ||||||||    
T  31411362 caagaagaaacttattgtatttcattcataataataatagatatacaagatgaaatcctaatatgaatatggaaactagaatgacacaaagtcactctag 31411461  T
Q  341 caaagctatgagcgacttcgtt 362  Q
    ||||||||||| ||||||||||    
T  31411462 caaagctatgaacgacttcgtt 31411483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 279 - 515
Target Start/End: Original strand, 40074065 - 40074298
Alignment:
Q  279 agagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtctccgaatg 378  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| | ||||||| ||||||||||||| |||||||||||| | |||     
T  40074065 agagatacaagatggaatcttaatatgaatatgaaaactagcatgacgcgaagcca-tttagcaaaactatgagcgactttgttggcttgtct-ctaata 40074162  T
Q  379 aacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattagagacgccac-tttactaccataaaga 476  Q
    |||||||||| ||||||| |||||||| || | ||||||||| ||||  |||| |   ||||| ||  ||||||| ||||| | ||||||||||||||||    
T  40074163 aacctaacattagaggttgctaaatcagaagcaaacagacgtttacagccattga--tactgcactataattagaaacgccgcttttactaccataaaga 40074260  T
Q  477 ctgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
    || || ||||||||||| ||  |||||||||||||||||    
T  40074261 ctatccaccacagttttgga-acaaaactcaaaatccac 40074298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 243 - 429
Target Start/End: Complemental strand, 27177864 - 27177677
Alignment:
Q  243 agaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagca 342  Q
    ||||||||||||||| |||||| | |  |||||||||||||||||  | |||||| |||||||||||||||||  || ||||| |||||||   ||||      
T  27177864 agaagaaacttattgtatttcaattaaaataatagtagagatacacaacggaatcttaatatgaatatggaaacaagaatgacacaaagccgtcctagtg 27177765  T
Q  343 aagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcaa-atctaacagacgtctacaatcat 429  Q
    || |||||||| ||||||||||||||||||  ||| ||||| |||||| ||||||||||||||| | |||| ||||||||||||||||    
T  27177764 aaactatgagctacttcgttggcttgtctcataataaacctgacatcaaaggttactaaatcaagagctaatagacgtctacaatcat 27177677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 405
Target Start/End: Complemental strand, 1605011 - 1604834
Alignment:
Q  227 tattaattttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacg 326  Q
    ||||| |||||| ||||||||||||||||||| ||||||| || ||||||  ||| ||| ||||||||||| ||||||||||| | ||| || ||||||     
T  1605011 tattattttttttacaagaagaaacttattgcgtttcatttataataataagagatataaaagatggaatc-taatatgaatacgaaaactaacatgaca 1604913  T
Q  327 caaagccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca 405  Q
    | || |||||||||| || |||||| |||||| ||||  |||||||| ||| ||||||| |||||| ||||||||||||    
T  1604912 ctaatccactctagcgaaactatgaacgactttgttgatttgtctcctaataaacctaatatcagatgttactaaatca 1604834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 367
Target Start/End: Complemental strand, 32025669 - 32025536
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| |||||||||||||||| || ||| ||| || ||||| ||||||||| || ||| ||| ||||||| |||||||||| |||||||||   |||     
T  32025669 tttttttacaagaagaaacttatagcgttttatt-ataataattgtagagatataacatgaaattctaatataaatatggaaactagcatgacatgaagt 32025571  T
Q  333 cactctagcaaagctatgagcgacttcgttggctt 367  Q
    ||||||||||||||||||||| ||||| |||||||    
T  32025570 cactctagcaaagctatgagcaacttcattggctt 32025536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 20214353 - 20214282
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatat 304  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||    
T  20214353 tttttttacaagaagaaacttattgcatttcattcaaaataatagtagagatacaaaatgaaatcctaatat 20214282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 28317907 - 28317799
Alignment:
Q  227 tattaattttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacg 326  Q
    |||| ||||||| ||| ||| ||| ||||||||||| ||| |  ||||||||||||||| |||||| |||| |||||| |||||| |||||| ||||||     
T  28317907 tatttatttttttacaggaa-aaatttattgcattttatttaaaataatagtagagatataagatgaaatcttaatataaatatgaaaattatcatgaca 28317809  T
Q  327 caaagccact 336  Q
    |||| |||||    
T  28317808 caaaaccact 28317799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 1605128 - 1605079
Alignment:
Q  227 tattaattttttaacaagaagaaacttattgcatttcattcatgataata 276  Q
    ||||| |||||| ||||||||||||||||||||||| ||| || ||||||    
T  1605128 tattattttttttacaagaagaaacttattgcattttatttataataata 1605079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 2599266 - 2599233
Alignment:
Q  272 taatagtagagatacaagatggaatcctaatatg 305  Q
    ||||||||||||||||||||| ||||||||||||    
T  2599266 taatagtagagatacaagatgaaatcctaatatg 2599233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 26927 - 27188
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||    
T  26927 tttttttacaagaaaaaacttattgcatttcattcataataatagcagagatacaagatgaaattctaatatgaatatgaaaactagcatgacgcaaagc 27026  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||  |||||| |||||||||||| ||    
T  27027 cactctagcaaagctatgagcgacttcgttggcttgtctccgaataaacctaaaatcagaggttacgaaatcagaagataacaggcgtctacaatca-tt 27125  T
Q  432 aataactgcgctcaaattagagacgccactt-tactaccataaagactgtctaccacagtttt 493  Q
     || ||||| || ||||||||||| ||| || |||| ||||||||||| ||||||| ||||||    
T  27126 gattactgcactaaaattagagacaccatttatactgccataaagactatctaccatagtttt 27188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 235 - 493
Target Start/End: Complemental strand, 58548 - 58288
Alignment:
Q  235 ttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagcca 334  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||  |||||||    
T  58548 ttttgacaagaagaaacttattgcatttcattcataataatagtagagatacaagatggaaccctaatatgaatatggaaactagcatgacataaagcca 58449  T
Q  335 ctctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaa 433  Q
    ||| |||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||| ||||||| || |||| || |||||||| |||||| |    
T  58448 ctcgagcaaagctatgagagacttcgttggcttgtcttccaataaacctaacatcagaggttattaaatcagaagctaataggcgtctacagtcattt-a 58350  T
Q  434 taactgcgctcaaattagagacgcca--ctttactaccataaagactgtctaccacagtttt 493  Q
    | ||| |||| ||||||||||| | |   |||||| ||||||||||| ||||||||| ||||    
T  58349 ttactacgctaaaattagagacacgattttttactgccataaagactatctaccacaatttt 58288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 233 - 385
Target Start/End: Complemental strand, 48522314 - 48522162
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  48522314 ttttttaacaagaagaaacttattgcatttcatttataataatagtagagatataagatggaatcttaatatgaatatggaaactagcatgacgcaaagc 48522215  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaa 385  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  48522214 cactctagcaaagctatgagcgacttcgttgacttgtctccgaataaacctaa 48522162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 403
Target Start/End: Complemental strand, 19956684 - 19956516
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||| |||||||   ||||| | ||  | |    
T  19956684 atttttttacaagaagaaacttattccatttcattcataataatattatagatacaagatggaatcctaatatgcatatgga---tagcaaggcgggagg 19956588  T
Q  332 ccactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat 403  Q
    | || |||||||| |||| |||||||||||||| |||||||| ||| ||| ||| || ||||||| ||||||    
T  19956587 caaccctagcaaaactataagcgacttcgttggtttgtctccaaataaacttaaaataagaggttgctaaat 19956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 26347492 - 26347349
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||||||| |||||  |||| |||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||| |||| | |||||    
T  26347492 tttttttacaagaagaaatttattttattttattcataataatagtagagatacaagatggaatcataatataaatatagaaattagtatgatgtaaagc 26347393  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaa 376  Q
    |||||||  || | ||||||||||||| |||  |||||||||||    
T  26347392 cactctaataaggttatgagcgacttcattgatttgtctccgaa 26347349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 515
Target Start/End: Original strand, 25070815 - 25071076
Alignment:
Q  233 ttttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagc 332  Q
    |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||                     
T  25070815 tttttttacaagaaaaaatttattgcatttcattcataataatggtagagatataagatggaatcctaaaatgaatatggaaa----------------- 25070897  T
Q  333 cactctagcaaagctatgagcgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcattt 431  Q
        |||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||| | || ||||||  |||||||| ||| ||    
T  25070898 ----ctagcaaaactatgagcaacttcgttggtttgtctccgaataaacctaacatcagaggttgctaaattagaagctaacatgcgtctacagtca-tt 25070992  T
Q  432 aataactgcgctcaaattagagacgccac-tttactaccataaagactgtctaccacagttttagagtcaaaactcaaaatccac 515  Q
     || |||||||| ||||||||||| ||||  | ||||||||| ||||  ||||||||| |||| || || ||||||||| |||||    
T  25070993 gatcactgcgctaaaattagagacaccacaataactaccatatagaccatctaccacaattttggaatc-aaactcaaagtccac 25071076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 403
Target Start/End: Complemental strand, 11080068 - 11079921
Alignment:
Q  256 tgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcga 355  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| |||||||||  |||| |||| |||| |  || | | || || || |||| || ||    
T  11080068 tgcatttcatttataataatcgtagagatacaagatggaatcctgatatgaatacagaaactagcctgacacggagtcgcccttgctaaactataagaga 11079969  T
Q  356 cttcgttggcttgtctccgaatgaacctaacatcagaggttactaaat 403  Q
    ||||||||| |||||||| |||||||||||||| ||| |||| |||||    
T  11079968 cttcgttggtttgtctcctaatgaacctaacataagatgttattaaat 11079921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 15393504 - 15393584
Alignment:
Q  245 aagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgac 325  Q
    ||||| |||| ||||||||||| || |||| ||||||||||||||||| |||| |||||||||||   |||||||||||||    
T  15393504 aagaagcttaatgcatttcatttataataacagtagagatacaagatgaaatcttaatatgaatacaaaaattagcatgac 15393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 15327523 - 15327469
Alignment:
Q  353 cgacttcgttggcttgtctccgaatgaacctaacatcagaggttactaaatcaaa 407  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||| | ||||||    
T  15327523 cgacttcattggcttgtctcctaatgaacctaacatcagaagttacaagatcaaa 15327469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 31592436 - 31592302
Alignment:
Q  256 tgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcga 355  Q
    ||||||||||| |  | || ||||||||||||||||||||| | |||   |||| ||||| |||||||||    ||| || ||||| || |||||||| |    
T  31592436 tgcatttcatttaaaaaaagagtagagatacaagatggaattcgaatgaaaatacggaaactagcatgacatggagctaccctagctaaactatgagcaa 31592337  T
Q  356 cttcgttggcttgtctccgaatgaacctaacatca 390  Q
    |||| ||||||||||||| ||| ||||| ||||||    
T  31592336 cttcattggcttgtctcctaataaacctcacatca 31592302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 501
Target Start/End: Complemental strand, 216574 - 216343
Alignment:
Q  271 ataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaagccactctagcaaagctatgagcgacttcgttggcttgtc 370  Q
    |||||||||||||||  |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  216574 ataatagtagagatattagatggaatcctaatatgaatatgaaaactagcatggcgcaaagccactctagcaaaggaatgagcgacttcgttggcttgtc 216475  T
Q  371 tccgaatgaacctaacatcagaggttactaaatca-aatctaacagacgtctacaatcatttaataactgcgctcaaattagagacgcca-ctttactac 468  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||  |||||||| ||| || || | |||||| |||||| ||| ||||  |||||| |    
T  216474 tccgaataaacctaacatcaaaggttactaaatcagaatctaacatgcgtctacagtca-ttgattattgcgctaaaattaaagatgccatttttactgc 216376  T
Q  469 cataaagactgtctaccacagttttagagtcaa 501  Q
    |||||||||| ||||||||| ||||||| ||||    
T  216375 cataaagactatctaccacaattttagaatcaa 216343  T

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Target: scaffold0360 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 5316 - 5399
Alignment:
Q  248 aaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaattagcatgacgcaaag 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| || ||||||||||||    
T  5316 aaacttattgcatttcattcatgataatagtagagatacaagatggaatcttaatatgaatataaaaactaacatgacgcaaag 5399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 20781 - 20698
Alignment:
Q  232 attttttaacaagaagaaacttattgcatttcattcatgataatagtagagatacaagatggaatcctaatatgaatatggaaa 315  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||| ||||    
T  20781 attttttgacaagaagaaacttattgcatttcatttataataatagtagagatacaagatgtaatcttaatatgaatatagaaa 20698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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