View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0227-INSERTION-3 (Length: 850)
Name: NF0227-INSERTION-3
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-3 |
 | |
|
| [»] chr3 (9 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 811; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 7 - 850
Target Start/End: Original strand, 6162888 - 6163731
Alignment:
| Q |
7 |
acaagtgagtttgacaaatcatctctcttttaattaacattatgcctttgttcatatagtgttaatgtctctctaattannnnnnngtgtgcatataaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6162888 |
acaagtgagtttgacaaatcatctcacttttaattaacattatgcctttgttcatatagtgttaatgtctctctaattatttttttgtgtgcatataaaa |
6162987 |
T |
|
| Q |
107 |
atagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggattgccaccagcatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6162988 |
atagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggattgccaccagcatc |
6163087 |
T |
|
| Q |
207 |
atatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatggacatcctagtatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163088 |
atatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatggacatcctagtatt |
6163187 |
T |
|
| Q |
307 |
cacaataatttccataggatggattgtctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaatta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163188 |
cacaataatttccataggatggattgtctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaatta |
6163287 |
T |
|
| Q |
407 |
agtgattaccgatattggtttaaagcaagcatttccaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtag |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163288 |
agtgattaccaatattggtttaaagcaagcatttccaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatgaatattataaaaattgtag |
6163387 |
T |
|
| Q |
507 |
aaataacttaaataaggaatggaatcgccattgatgtttgggtccataatatcatatcatgtcaccattgaaaagcatgtacctataagctatatttata |
606 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163388 |
aaataacttaaataaggaatggaatcaccattgatgtttgggtccataatatcatatcatgtcaccattgaaaagcatgtacctataagctatatttata |
6163487 |
T |
|
| Q |
607 |
acaaaagataaactcaaggtaaattctttttatataaaccgttgttttcaaaaactatcataaagagcttatgaaaataatcttgaaacaacatacgcgc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163488 |
acaaaagataaactcaaggtaaattctttttatataaaccgttgttttcaaaaactatcataaagagcttatgaaaataatcttgaaacaacatacgcgc |
6163587 |
T |
|
| Q |
707 |
aaacacacacacgtaaatatcaaatattacataagcctaagagtcaagttaaggaattatgggatttggttgatcttggatcttaaaaaactacatgtat |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163588 |
aaacacacacacgtaaatatcaaatattacataagcctaagagtcaagttaaggaattatgggatttggttgatcttggatcttaaaaaactacatgtat |
6163687 |
T |
|
| Q |
807 |
ctaaccacatcaacaattcaaattgacgacacttcattcattgg |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163688 |
ctaaccacatcaacaattcaaattgacgacacttcattcattgg |
6163731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 94 - 599
Target Start/End: Original strand, 6135166 - 6135673
Alignment:
| Q |
94 |
tgtgcatataaaaatagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
6135166 |
tgtgcatataaaaatagtggagcagaatggcatgagccaggagtgacaaactgtgcaaaagagacaacaccaataaatggatcatcattttcacaaggat |
6135265 |
T |
|
| Q |
194 |
tgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatgg |
293 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
6135266 |
tggcaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaaacttgttcagcttctcaacgttacagctctatcagaattgataaaagatgg |
6135365 |
T |
|
| Q |
294 |
acatcctagtatt-cacaataatttccataggatggattgt-ctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaat |
391 |
Q |
| |
|
| ||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
6135366 |
aaatcctagtatttcacaataacttccataagatggattgtactcattggtgtatagcaggggtcccagatacttggaatgagattctctatgcatcaat |
6135465 |
T |
|
| Q |
392 |
catgaatttgaattaagtgattaccgatattggtttaaagcaagcatttccaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatgaata |
491 |
Q |
| |
|
||| |||| |||||||||||||| | |||||||||||||||||| || |||||| | ||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
6135466 |
cataaattagaattaagtgattatcaatattggtttaaagcaagaatctccaataaagaaatctaagtgggttttaagaacttgaggtgacaaatgaata |
6135565 |
T |
|
| Q |
492 |
ttataaaaattgtagaaataacttaaataaggaatggaatcgccattgatgtttgggtccataatatcatatcatgtcaccattgaaaagcatgtaccta |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6135566 |
ttataaaaattgtagaaataacttaaataaggaatggaatcaccattgatgtttgggtccataatatcatatcatgtcaacattgaaaagcatgtaccta |
6135665 |
T |
|
| Q |
592 |
taagctat |
599 |
Q |
| |
|
|||||||| |
|
|
| T |
6135666 |
taagctat |
6135673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 94 - 575
Target Start/End: Original strand, 6137888 - 6138370
Alignment:
| Q |
94 |
tgtgcatataaaaatagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggat |
193 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6137888 |
tgtgcatataaaaatagtggatcagaatggcatgagccaggagtgacagactgtggaaaagagacaacaccaataaatggatcatcatcctcacttggat |
6137987 |
T |
|
| Q |
194 |
tgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6137988 |
tgccaccagcatcatatgtattgcaaaatgtgttgcagaaaataaccaaacctgttcagcttctcaacattacagctttatcagaattgagaaaagatgg |
6138087 |
T |
|
| Q |
294 |
acatcctagtattcacaataatttccataggatggattgt-ctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaatc |
392 |
Q |
| |
|
||||||||||||||||||| || |||| | ||||||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6138088 |
acatcctagtattcacaattatgcccatggaatggattgtactcattggtgtatagcaggagtcccagatacttggaatgagattctgtatgcatcaatc |
6138187 |
T |
|
| Q |
393 |
atgaatttgaattaagtgattaccgatattggtttaaagcaagcatttccaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatgaatat |
492 |
Q |
| |
|
| ||||| |||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6138188 |
acgaattagaattaagtgattatcaatattggtttaaagtaagcatctacaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatggatat |
6138287 |
T |
|
| Q |
493 |
tataaaaattgtagaaataacttaaataaggaatggaatcgccattgatgtttgggtccataatatcatatcatgtcaccatt |
575 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||| | ||| |||||| |||| |
|
|
| T |
6138288 |
cataaaaattgtagaaataacttaaataatgaatggaatcatcattaatgtttggatccataataacgtattatgtcatcatt |
6138370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 94 - 575
Target Start/End: Complemental strand, 13284526 - 13284044
Alignment:
| Q |
94 |
tgtgcatataaaaatagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggat |
193 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13284526 |
tgtgcatataaaaatagtggatcagaatggcatgagccaggagtgacaggctgtggaaaagagataacaccaataaatggatcatcatcctcacttggat |
13284427 |
T |
|
| Q |
194 |
tgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatgg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13284426 |
tgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataacaaaacctgttcagcttctcaacattacagctttatcagaattgagaaaagatgg |
13284327 |
T |
|
| Q |
294 |
acatcctagtattcacaataatttccataggatggattgt-ctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaatc |
392 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||| ||||||||||||||| || |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
13284326 |
acatcctagtattcacaataatgcccacggaatggattgtactcattggtgtatagcaggagtcccagatacttggaatgagattctttatgcatcaatc |
13284227 |
T |
|
| Q |
393 |
atgaatttgaattaagtgattaccgatattggtttaaagcaagcatttccaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatgaatat |
492 |
Q |
| |
|
| ||||| ||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13284226 |
acgaattaaaattaagtgattatcaatattggtttaaagtaagcatctacaatgaggaaatctaagtgggttttaggaacttgacgtgacaaatggatat |
13284127 |
T |
|
| Q |
493 |
tataaaaattgtagaaataacttaaataaggaatggaatcgccattgatgtttgggtccataatatcatatcatgtcaccatt |
575 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||| | ||| |||||| |||| |
|
|
| T |
13284126 |
aataaaaattgtagaaataacttaaataaagaatggaatcatcattaatgtttggatccataataacgtattatgtcatcatt |
13284044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 94 - 428
Target Start/End: Original strand, 6132079 - 6132418
Alignment:
| Q |
94 |
tgtgcatataaaaatagtggagcagaatggcatgagccaggagtgacaaactgtggaaaagagacaacaccaataaatggatcaacatcctcacttggat |
193 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||| |||| |
|
|
| T |
6132079 |
tgtgcatataaaaatagtgggacacaatggaatgagccaggagtgacaaactgtgcaaaagagacaacaccaatagatggaacatcatcctcacaaggat |
6132178 |
T |
|
| Q |
194 |
tgccaccagcatcatatgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatcagaattgagaaaagatgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||| || || || |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
6132179 |
tgccaccagcatcatatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctgaacattacagctctctcagaattgagaaaagatgg |
6132278 |
T |
|
| Q |
294 |
acatcctagtattcacaataatttccataggatggattgt-ctcattggtgtatagttggggtcccagatacttggaatgagattatgtatgcatcaatc |
392 |
Q |
| |
|
|||||||||| ||| ||| |||||| | ||||||||| | ||||||||| ||| |||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
6132279 |
acatcctagttctcataatggcttccatggcatggattgtacacattggtgtgtagctggggtaccagatacttggaatgagcttttgtatgcatcaatc |
6132378 |
T |
|
| Q |
393 |
a-tg---aatttgaattaagtgattaccgatattggttta |
428 |
Q |
| |
|
| || |||| |||||| ||||||| | ||||||||||| |
|
|
| T |
6132379 |
agtgaataattagaattatgtgattagcaatattggttta |
6132418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 6270495 - 6270611
Alignment:
| Q |
178 |
acatcctcacttggattgccaccagcatcat-atgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatca |
276 |
Q |
| |
|
|||| |||||||||||| |||||| |||| | ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| | | |
|
|
| T |
6270495 |
acatactcacttggatttccaccaacatctttatgtattgcaaaatgtgttacaaaatataaccaagtttgttcagcttctcaacattacagatctctta |
6270594 |
T |
|
| Q |
277 |
gaattgagaaaagatgg |
293 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6270595 |
gaatagagaaaagatgg |
6270611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 6260974 - 6261064
Alignment:
| Q |
178 |
acatcctcacttggattgccaccagcatcat-atgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacag |
268 |
Q |
| |
|
|||| |||||||||||| |||||| |||| | |||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6260974 |
acatactcacttggatttccaccaacatctttatgtatagcaat-tgtgttacaaaaaataaccaagtctgttcagcttctcaacattacag |
6261064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 585 - 643
Target Start/End: Original strand, 42808918 - 42808976
Alignment:
| Q |
585 |
gtacctataagctatatttataacaaaagataaactcaaggtaaattctttttatataa |
643 |
Q |
| |
|
||||||||||||| | | |||||||||||||||| | ||| |||||| ||||||||||| |
|
|
| T |
42808918 |
gtacctataagctgtttctataacaaaagataaaataaagttaaattgtttttatataa |
42808976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 6232759 - 6232820
Alignment:
| Q |
351 |
ggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgat |
412 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||| | |||||||||| || ||||||| |||| |
|
|
| T |
6232759 |
ggggtctcagatacctggaatgagattctgtatccgtcaatcatgagttggaattaattgat |
6232820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 686
Target Start/End: Original strand, 44644285 - 44644322
Alignment:
| Q |
649 |
tgttttcaaaaactatcataaagagcttatgaaaataa |
686 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
44644285 |
tgttttcaaaaactatcttgaagagcttatgaaaataa |
44644322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 973 times since January 2019
Visitors: 2388