View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227-INSERTION-5 (Length: 778)
Name: NF0227-INSERTION-5
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-5 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 5773118 - 5773512
Alignment:
| Q |
7 |
aagaggcggttcataaattttccataaagttaatcttactagctaaccaaatattttgatggcataactacttaatagccaagtaaaaggtgtggttatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5773118 |
aagaggcggttcataaattttccataaagttaatcttactagctaaccaaatattttgatggcttaactacttaatagccaagtaaaaggtgtggttatc |
5773217 |
T |
|
| Q |
107 |
tattaaacaaaaacaaatggtgcagactaaatccatgaggtggtgcctctttgttccaatcaaaatagatacatagtgattaagcataagcctcaacttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5773218 |
tattaaacaaaaacaaatggtgcagactaaatccatgaggtggtgcctctttgttccaatcaaaatagatacatagtgattaagcataagcctcaacttc |
5773317 |
T |
|
| Q |
207 |
cttctctaaatttcaggcaatagcttgatttaatttctaacagtttttatcgttcacatcttaaactctactaaaatgaaaatagaaaccacttattcaa |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5773318 |
cttctcaaaatttcaggcaatagcttgatttaatttcttacagtttttatctttcacatcttaaactctactaaaatgagaatagaaaccacttattcaa |
5773417 |
T |
|
| Q |
307 |
tatttttactcgtattttgtttnnnnnnnnnnnnnnccattaggttcttatcactgtcactttaagtgttgccttgtcctcttgtttccaccttcattca |
406 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5773418 |
tatttttactcgtattttgttt-----taaaaaaaaccattaggttcttatcactgtcactttaagtgttgccttgtcctcttgtttccaccttcattca |
5773512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 5807634 - 5807449
Alignment:
| Q |
7 |
aagaggcggttcataaattttccataaagttaatcttactagctaaccaaatattttgatggcataactacttaatagccaagtaaaaggtgtggttatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
5807634 |
aagaggcggttcataaattttccataaagttaatcttactagctaaccaaatattttgatggcttaactacttaatagccaagtaaaaggtatggttatc |
5807535 |
T |
|
| Q |
107 |
tattaaacaaaaacaaatggtgcagactaaatccatgaggtggtgcctctttgttccaatcaaaatagatacatagtgattaagca |
192 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5807534 |
tattaaacaaaaacaaatggtgcaaactaaatccatgaggtggtgcctctttgttccaatcaaaatagatacatagtgattaagca |
5807449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 483 - 665
Target Start/End: Original strand, 5773593 - 5773775
Alignment:
| Q |
483 |
atctactctatctttagtccttatgtccttctttcccttcatttaattcttactaaaattcattgtattttaagagaaaagaaaaagaaatatatctaca |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5773593 |
atctactctatctttagtccttatgtccttctttcccttcatttaattcttactaaatttcattgtattttaagagaaaagaaaaagaaacatatctaca |
5773692 |
T |
|
| Q |
583 |
tatcggactttgatttttcttcactaactaagtatgtaaaacaaacaaaaaatgatattctaaattaatttggtagactccta |
665 |
Q |
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| T |
5773693 |
tatcggactttgatctttcttcactaactaagtatgtaaaacaaacaaaaaatgatattctaaattaatttggtagactccta |
5773775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 664 - 778
Target Start/End: Original strand, 5773921 - 5774035
Alignment:
| Q |
664 |
taagttgtggtcatcgactttgaaaaataaacttagttttgatataaaaataaattgtgaagggtgattgaatttgtactatttatgttagttccaagag |
763 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5773921 |
taagttgtggtcatcgactgtgaaaaataaacttagttttgatataaaaataaattgtgaagggtgattgaatttgtactatttatgttagttccaagag |
5774020 |
T |
|
| Q |
764 |
aatctaaaagttgtg |
778 |
Q |
| |
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||||||||||||||| |
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| T |
5774021 |
aatctaaaagttgtg |
5774035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 5798031 - 5797951
Alignment:
| Q |
485 |
ctactctatctttagtccttatgtccttctttcccttcatttaat---tcttactaaaattcattgtattttaagagaaaa |
562 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
5798031 |
ctactctatctttagtccttatgtccttctttcccttcatttaattcttcttactaaaattcattgtattttaagaaaaaa |
5797951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 5798189 - 5798126
Alignment:
| Q |
343 |
ccattaggttcttatcactgtcactttaagtgttgccttgtcctcttgtttccaccttcattca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
5798189 |
ccattaggttcttatcactgtcactttaagtggtaccttgtccttttgtttccaccttcattca |
5798126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 26425906 - 26426127
Alignment:
| Q |
101 |
gttatctattaaacaaaaacaaatggtgcagactaaatccatgaggtggtgcctctttgttccaatcaaaatagatacatagtgattaagcataagcctc |
200 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
26425906 |
gttatctcttaaataaaaacaaatggtgcagactaaatcaatgaag-----cctctttattccaatcaacatagatacatggtgattaagtataagcctc |
26426000 |
T |
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| Q |
201 |
aacttccttctctaaatttcaggcaatagcttgatttaatttctaacagtttttatcgttcacatcttaaactctactaaaatgaaaatagaaaccactt |
300 |
Q |
| |
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||||| ||||| ||| |||||| |||||| ||||||||||||||||||||||| | ||| ||||| ||| |||| || || || |||||||||||||| |
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| T |
26426001 |
aacttgtttctcaaaagttcaggtgatagctggatttaatttctaacagtttttagctttctcatctaaaattctagtagaacgagaatagaaaccactt |
26426100 |
T |
|
| Q |
301 |
attcaatatttttactcgtattttgtt |
327 |
Q |
| |
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||| |||||||||||| |||| |||| |
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|
| T |
26426101 |
gttctatatttttactcttattatgtt |
26426127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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