View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0227-INSERTION-6 (Length: 702)
Name: NF0227-INSERTION-6
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-6 |
 | |
|
| [»] chr7 (17 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 702
Target Start/End: Complemental strand, 39563252 - 39562562
Alignment:
| Q |
8 |
aaaataatctactataactgtttcagggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacag |
107 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39563252 |
aaaataatctactataactgttttagg-agaaacaaagcacttatcaaagaattgagtactccagcaccttgttcgaaagatctttattttgcttcacag |
39563154 |
T |
|
| Q |
108 |
tactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39563153 |
tactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtact |
39563054 |
T |
|
| Q |
208 |
caaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaatttaatggcttcaaactct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39563053 |
caaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaatttaatggcttcaaactct |
39562954 |
T |
|
| Q |
308 |
cgagtttgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562953 |
cgagtttgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatc |
39562854 |
T |
|
| Q |
408 |
aagaatgctaattcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562853 |
aagaatgctaattcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttg |
39562754 |
T |
|
| Q |
508 |
ctcaggcaagtatctaaacaaatttataaaatattgattttggtaccatcatagatgtctttattatcttatagaacataacaaaaaacagtaaattatc |
607 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562753 |
ctcaggcaagtatctaaaaaaatttataaaatattgattttggtaccatcatagatgtctttattatcttatagaacataacaaaaaacagtaaattatc |
39562654 |
T |
|
| Q |
608 |
ttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttgaatgg |
702 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562653 |
ttgcattgcaggttgtaatt-gagct-cccatatgtttttgtacaagctgtagtctat-ggcattatagtgtatgctatgattggttttgaatgg |
39562562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 698
Target Start/End: Original strand, 39339755 - 39340432
Alignment:
| Q |
16 |
ctactataactgtttcagggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacagtactcgag |
115 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||| |||||| ||| ||||||||| |||| ||||||||||||||| || | ||||||||||| |
|
|
| T |
39339755 |
ctactataattgtttcagg-ataaacaaagcacttatcaaggaattgggtagtccagcaccttgttcaaaagatctttattttcctactcagtactcgag |
39339853 |
T |
|
| Q |
116 |
atccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtactcaaccgca |
215 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39339854 |
atccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctgtactcaaccgca |
39339953 |
T |
|
| Q |
216 |
gttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaa--tttaatggcttcaaactctcgagtt |
313 |
Q |
| |
|
|| ||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||| | ||||||||||||| || || |
|
|
| T |
39339954 |
gtggctgttttgctaggaagcatgttttgggaccttagctccaaaatgtaaaatcaaattggaaaactagaaattttttacggcttcaaactcttgaatt |
39340053 |
T |
|
| Q |
314 |
tgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatcaagaat |
413 |
Q |
| |
|
||||| ||||| | || ||| || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | |||||| ||| |||| |
|
|
| T |
39340054 |
tgtaaaatttcatttc-attattgcagtgaaaaggagcaagatctttttaatgccatggggtccatgtatgctgctgttatccttattggcgtcatgaat |
39340152 |
T |
|
| Q |
414 |
gctaattcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcagg |
513 |
Q |
| |
|
| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39340153 |
ggtaattcagtgcagccggtggttgctgttgaaagaacggtcttttatagagaaagagcggccggaatgtattcagcttttccatatgcttttgggcagg |
39340252 |
T |
|
| Q |
514 |
caagtatctaaacaaatttataaaatattgattttggtaccatcatagatgtctttattatcttatagaacataacaaaaaacagtaaattatcttgcat |
613 |
Q |
| |
|
|||||||| | || |||||||||||||| || |||||||| | |||| ||||| |||| || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
39340253 |
caagtatccataccaatttataaaatat--cttctggtaccaagtttgatgactttaatatcgta-agaacataacaaaaaacagttaattagcttgcat |
39340349 |
T |
|
| Q |
614 |
tgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttga |
698 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
39340350 |
tgcaggttgtaatataagct-cccatatgtttttgtacaagctgtggtctat-ggcattatagtgtatgcgatgattggttttga |
39340432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Original strand, 39354568 - 39355250
Alignment:
| Q |
8 |
aaaataatctactataactgtttcagggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacag |
107 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| |||||||||| |||| |||||||| |||||| |||||||| |
|
|
| T |
39354568 |
aaaataatctactataattgtttcagg-ataaacaaagcacttgtcaaagaattgagtgctccagcaccttgttcaaaagatctctattttccttcacag |
39354666 |
T |
|
| Q |
108 |
tactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtact |
207 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39354667 |
tactcgagatccttttttacacaatgtatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctgtact |
39354766 |
T |
|
| Q |
208 |
caaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataa-atttaatggcttcaaactc |
306 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
39354767 |
caaccgccgtggctgttttgcttggaagcatgttttgggaccttggctccaaaatgtaaattcaaattggaaaactagaattttttacggcttcaaactc |
39354866 |
T |
|
| Q |
307 |
tcgagtttgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcat |
406 |
Q |
| |
|
| || ||||||| ||||| | || ||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |
|
|
| T |
39354867 |
ttgaatttgtaaaatttcatttc-attattgcagtgaaaaggagcaagatctttttaatgccatggggtccatgtattctgctgttatcctaattggcgt |
39354965 |
T |
|
| Q |
407 |
caagaatgctaattcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgctttt |
506 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
39354966 |
catgaattgtaattcagtgcagccggtggttgttgttgaaagaacggtcttttatagagaaagagcagccggaatgtattctacttttccatatgcgttt |
39355065 |
T |
|
| Q |
507 |
gctcaggcaagtatctaaacaaatttataaaatattgattttggtaccatcatagatgtctttattatcttatagaacataacaaaaaacagtaaattat |
606 |
Q |
| |
|
| |||||||||||| || |||||||||||||| || |||||||| || ||| ||||| |||| || |||||||||||||||||||| |||||| |
|
|
| T |
39355066 |
gggcaggcaagtatccttaccaatttataaaatatatcttctggtaccaagattaatgactttaatatcgta-agaacataacaaaaaacagttaattat |
39355164 |
T |
|
| Q |
607 |
cttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttt |
695 |
Q |
| |
|
||||||||||||||| | | | ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
39355165 |
cttgcattgcaggttttga-tagagct-cccatatgtttttgtacaagctgtggtctat-ggcattatagtgtatgcgatgattggttt |
39355250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 595
Target Start/End: Original strand, 39367169 - 39367751
Alignment:
| Q |
8 |
aaaataatctactataactgtttcagggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacag |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||| |||||||| |||||| |||||| | |
|
|
| T |
39367169 |
aaaataatctactacaactgtttcagg-agaaacaaagcacttatcaaagaactgagtgctccagcaccttgttcaaaagatctctattttccttcacgg |
39367267 |
T |
|
| Q |
108 |
tactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtact |
207 |
Q |
| |
|
|||||||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
39367268 |
tactcgagatccttctttacacaatgtatagcctgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccataagatttctgtatt |
39367367 |
T |
|
| Q |
208 |
caaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaa--tttaatggcttcaaact |
305 |
Q |
| |
|
|||| || || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |
|
|
| T |
39367368 |
caactgcggtggctgttttgcttggaagcatgttttggaaccttggctccaaaatgtaagatcaaattgtaaaactagaaattttttatggcttca---- |
39367463 |
T |
|
| Q |
306 |
ctcgagtttgtaatatttcgtatcaattttttcagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggca |
405 |
Q |
| |
|
||||||||| ||||| | || || || ||||||||| || ||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||| |
|
|
| T |
39367464 |
----agtttgtaaaatttcatttc-atcattgcagtgaaaaagaccaagatctttttaatgccatgggatccatgtatgctgctgttatcctaattggcg |
39367558 |
T |
|
| Q |
406 |
tcaagaatgctaattcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttt |
505 |
Q |
| |
|
|| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
39367559 |
ccatgaatagtaattcagtgcagccagtggttggtgtcgaaagaacggtcttttatagagaaagagcagcccgaatgtactcagcttttccatatgcttt |
39367658 |
T |
|
| Q |
506 |
tgctcaggcaagtatctaaacaaatttataaaatattgattttggtac---catcatagatgtctttattatcttatagaacataacaaaaaa |
595 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| | || || ||| ||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
39367659 |
agctcaggcaagaatccaaaccaatttataaaatacaggttctgataccatcatcatagatgtctttaatatcttaaagaaaataacaaaaaa |
39367751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 39537144 - 39536864
Alignment:
| Q |
8 |
aaaataatctactataactgtttcagggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacag |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
39537144 |
aaaataatctactacaactgtttcagg-agaaacaaagcacttatcaaagaattgagtactccagcaccttgttcgaaagatctttattttacttcacag |
39537046 |
T |
|
| Q |
108 |
tactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtact |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||| ||| | |||||| |||||| |||||| |
|
|
| T |
39537045 |
tactcgagatccttttggacacaatgtatggcttgtttgtggaaacaacattggtcctactggcgcaatcctgtatacactgccataagatttatgtact |
39536946 |
T |
|
| Q |
208 |
caaccgcagttgctgttttgtttggaagcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaat |
289 |
Q |
| |
|
| ||||| || |||||| || |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
39536945 |
cgaccgcggtagctgttatgcttggaaccatgttttggaaccttggctccaaaatgtaagatcaaattgaaaaactagaaat |
39536864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 34 - 289
Target Start/End: Complemental strand, 39546434 - 39546180
Alignment:
| Q |
34 |
ggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacagtactcgagatccttttggacacaatg |
133 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39546434 |
ggagaaacaaaacacttatcgaagaattgagtactccagcttctggttcgaaagatctttattttacttcacagtactcgagatccttttggacacaatg |
39546335 |
T |
|
| Q |
134 |
catggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtactcaaccgcagttgctgttttgtttgga |
233 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |||||| |||||||||||||||||| | || ||||||||| ||||| |
|
|
| T |
39546334 |
tatggcttgtttatggaaacaacattggtcttactggcgcaatcctgtatacactgccataagatttctgtactcaacctccgtagctgttttgcttgga |
39546235 |
T |
|
| Q |
234 |
agcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaat |
289 |
Q |
| |
|
| |||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
39546234 |
accatgttttggaaccttggctccaatatgtaagat-aaattggaaaactagaaat |
39546180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 34 - 289
Target Start/End: Complemental strand, 1083741 - 1083487
Alignment:
| Q |
34 |
ggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacagtactcgagatccttttggacacaatg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1083741 |
ggagaaacaaagcacttatcaaagaattgagtactccagcttctggttcaagagatctttattttacttcacagtactcgagatccttttggacacaatg |
1083642 |
T |
|
| Q |
134 |
catggcttgcttatggaaacaacattggtcttattggcgcaatcctgaatataatgccattagatttctgtactcaaccgcagttgctgttttgtttgga |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |||||| |||||||||||| ||| ||| || ||| ||||| |||| |
|
|
| T |
1083641 |
catggcttgtttatggaaacaacattggtcttactggcgcaatcctgtatacactgccataagatttctgtacacaatcgcggtagctattttgcttggg |
1083542 |
T |
|
| Q |
234 |
agcatgttttgggaccttggctccaaaatgtaagatcaaattggaaaactataaat |
289 |
Q |
| |
|
| |||||||||| || |||||||||| ||||||||| |||||| ||||||| |||| |
|
|
| T |
1083541 |
accatgttttggaacgttggctccaatatgtaagat-aaattgtaaaactagaaat |
1083487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 338 - 520
Target Start/End: Complemental strand, 39546117 - 39545935
Alignment:
| Q |
338 |
cagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatcaagaatgctaattcagtgcagccagtggtt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
39546117 |
cagtgaaaaggaacaagatctttttaatgccatggggtccatgtattcagccgttctcctaattggcatcaagaatagtaatgctgtgcagccagtggta |
39546018 |
T |
|
| Q |
438 |
gctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcaggcaagtat |
520 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39546017 |
gctgttgaaagaacggtcttttatcgagaaagagcagccggaatgtattcagcttttccatatgcttttgctcaggcaagtat |
39545935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 338 - 522
Target Start/End: Complemental strand, 1083424 - 1083240
Alignment:
| Q |
338 |
cagtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatcaagaatgctaattcagtgcagccagtggtt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||| || | |||||||||| ||||| |
|
|
| T |
1083424 |
cagtgaaaaggaacaagatctttttaatgccatgggatccatgtattgtgctgttctaataattggcatcaagaataatagtgcagtgcagccgatggtt |
1083325 |
T |
|
| Q |
438 |
gctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcaggcaagtatct |
522 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
1083324 |
gctgttgaaagaaccgtcttttatagagaaagagcagccggaatgtattcagattttccatatgcttttggtcaggcaagcatct |
1083240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 339 - 522
Target Start/End: Complemental strand, 39536799 - 39536616
Alignment:
| Q |
339 |
agtgaaaaggaacaagatctttttaatgccatggggtccatgtattctgctgtgatcgtaattggcatcaagaatgctaattcagtgcagccagtggttg |
438 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
39536799 |
agtgaaaaagtacaagatctttttaatgccatggggtcaatgtattctgctgttctcctaattggaatcaagaatggtaatgcagtgcagccagtggttt |
39536700 |
T |
|
| Q |
439 |
ctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcaggcaagtatct |
522 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
39536699 |
ctgttgaaagaacagtcttttatagagaaagagcggctggaatgtattcagctttgccgtatgcttttgctcaggcaagaatct |
39536616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 608 - 698
Target Start/End: Original strand, 39367864 - 39367951
Alignment:
| Q |
608 |
ttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttga |
698 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||||| |||||||| |||||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
39367864 |
ttgcattgcaggttgtaatag-agctccc-atatgtttttgtgcaagctgtggtctat-ggcattgtagtgtatgttatgattggttttga |
39367951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 606 - 698
Target Start/End: Complemental strand, 39545695 - 39545606
Alignment:
| Q |
606 |
tcttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttga |
698 |
Q |
| |
|
||||||||||||||||||||||| |||| || | |||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
39545695 |
tcttgcattgcaggttgtaattg-agcttcc-acatgtttttgtacaatctgtggtctatggat-ttatagtttatgctatgattggttttga |
39545606 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 39573710 - 39573622
Alignment:
| Q |
90 |
ctttattttgcttcacagtactcgagatccttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcc |
178 |
Q |
| |
|
||||||||| |||| |||| ||||| ||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39573710 |
ctttattttccttcgaagtattcgaggtccttttttatccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaatcc |
39573622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 698
Target Start/End: Complemental strand, 39536395 - 39536308
Alignment:
| Q |
608 |
ttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttga |
698 |
Q |
| |
|
||||||||||||||||||||| |||| || | ||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
39536395 |
ttgcattgcaggttgtaattg-agcttcc-acatgtttttgtacagtctgtggtctatggat-ttatagtttatgctatgattggttttga |
39536308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 39620997 - 39620956
Alignment:
| Q |
137 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39620997 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
39620956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 698
Target Start/End: Complemental strand, 1083003 - 1082914
Alignment:
| Q |
606 |
tcttgcattgcaggttgtaattggagctccccatatgtttttgtacaagctgtagtctatgggcattatagtgtatgctatgattggttttga |
698 |
Q |
| |
|
||||||||| ||||||||||||| |||| || | |||||||||||||| |||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1083003 |
tcttgcatttcaggttgtaattg-agcttcc-acatgtttttgtacaatctgtgatctatggat-ttatagtttatgctatgattggttttga |
1082914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 39588273 - 39588132
Alignment:
| Q |
34 |
ggagaaacaaagcacttatcaaagaattgagtactccagcaccaggttcgaaagatctttattttgcttcacagtactcgagatccttttggacacaatg |
133 |
Q |
| |
|
||||||||||||| ||||| |||||||||| |||||||| || ||| || || |||| |||| ||||| ||||||| || ||||| |||| |
|
|
| T |
39588273 |
ggagaaacaaagctcttattcaagaattgagcactccagctcctttttcaaatgaactttgttttccttcaaagtactctaggtccttcgctgtccaatt |
39588174 |
T |
|
| Q |
134 |
catggcttgcttatggaaacaacattggtcttattggcgcaa |
175 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39588173 |
tatgacttgtttatggaaacaacattggtcttactggcgcaa |
39588132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 2888187 - 2888226
Alignment:
| Q |
136 |
tggcttgcttatggaaacaacattggtcttattggcgcaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2888187 |
tggcttgcttatggaaacaacattggtcatattggcgcaa |
2888226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 2896196 - 2896138
Alignment:
| Q |
120 |
ttttggacacaatgcatggcttgcttatggaaacaacattggtcttattggcgcaatcc |
178 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
2896196 |
ttttggatccaatgcttggcttgcctatggaaacaacattggtcatactggcgcaatcc |
2896138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 487
Target Start/End: Original strand, 2879026 - 2879093
Alignment:
| Q |
420 |
tcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattc |
487 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| || ||||||||||||||||| || ||||||||||| |
|
|
| T |
2879026 |
tcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc |
2879093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 2878678 - 2878724
Alignment:
| Q |
129 |
caatgcatggcttgcttatggaaacaacattggtcttattggcgcaa |
175 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
2878678 |
caatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaa |
2878724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 513
Target Start/End: Complemental strand, 2895867 - 2895786
Alignment:
| Q |
432 |
gtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcagg |
513 |
Q |
| |
|
||||| ||||| |||||| | ||||| |||||||||||||| || ||||||||||| || || || ||||| ||||| |||| |
|
|
| T |
2895867 |
gtggtagctgttgaaagatctgtcttctatagagaaagagctgctggaatgtattctgccttaccctatgcatttgcacagg |
2895786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 513
Target Start/End: Complemental strand, 2147430 - 2147364
Alignment:
| Q |
447 |
agaacggtcttttatagagaaagagcagccggaatgtattcagcttttccatatgcttttgctcagg |
513 |
Q |
| |
|
||||| ||||| || ||||||||||| || ||||||||||||||| | ||||||||| |||| |||| |
|
|
| T |
2147430 |
agaacagtcttctacagagaaagagctgcaggaatgtattcagctatgccatatgctcttgcacagg |
2147364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 44232611 - 44232550
Alignment:
| Q |
423 |
gtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgta |
484 |
Q |
| |
|
|||||||| |||||||| || |||||||| || ||||||||||||| ||| || |||||||| |
|
|
| T |
44232611 |
gtgcagcccgtggttgcagtggaaagaactgtattttatagagaaaaagctgctggaatgta |
44232550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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