View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227-INSERTION-9 (Length: 438)
Name: NF0227-INSERTION-9
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-INSERTION-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 438
Target Start/End: Complemental strand, 43587832 - 43587399
Alignment:
| Q |
5 |
acaaaaacaaccacaaatgaaagacacactccactaagctcaaattctatgcaaaatccttcaacaacataacactagttgaagatatcattcactcaca |
104 |
Q |
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| T |
43587832 |
acaaaaacaaccacaaatgaaagacacactccactaagctcaaattctatgcaaaatccttcaacaacataacactagttgaagatatcattcactcaca |
43587733 |
T |
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| Q |
105 |
catgtcactcctccaactcaaactaacccctaatgcattcacacctctctcttcttcctcacataaaaaattcagaccaaacacaacactctttgcaaga |
204 |
Q |
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| T |
43587732 |
catgtcactcctccaactcaaactaacccctaatgcattcacacctctctcttcttcctcacataaaaaattcagaccaaacacaacactctttgcaaga |
43587633 |
T |
|
| Q |
205 |
accaaaattagagcagttggtacagtccctgagaaaaaggattcagagaccactactgactctaatgaccctccctctataggctttgcatttgtcagtg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43587632 |
accaaaattagagcagttggtacagtccctgagaaaaaggattcagagaccactactgactctaatgaccctccctctataggctttgcatttgtcagtg |
43587533 |
T |
|
| Q |
305 |
taagttcaaattcataatactatactaaatgtacatacatgtaacataaaataacatgtaactaattaattttacttgtatatagttggttttacatttt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43587532 |
taagttcaaattcataatactatactaaatgtacatatatgtaacataaaataacatgtaactaattaattttacttgtatatagttggttttacatttt |
43587433 |
T |
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| Q |
405 |
ttattaaattaatctctaatgttttgtggattag |
438 |
Q |
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| T |
43587432 |
ttattaaattaatctctaatgttttgtggattag |
43587399 |
T |
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