View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0227-Insertion-13 (Length: 309)

Name: NF0227-Insertion-13
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0227-Insertion-13
NF0227-Insertion-13
[»] chr7 (30 HSPs)
chr7 (7-309)||(24391070-24391372)
chr7 (202-309)||(24385052-24385159)
chr7 (11-63)||(19637581-19637633)
chr7 (7-63)||(24384851-24384907)
chr7 (16-63)||(46769039-46769086)
chr7 (13-63)||(22021051-22021101)
chr7 (18-63)||(24383803-24383848)
chr7 (18-70)||(19779275-19779327)
chr7 (15-63)||(22036771-22036819)
chr7 (16-63)||(16846801-16846848)
chr7 (8-63)||(22534303-22534358)
chr7 (16-63)||(26217632-26217679)
chr7 (16-63)||(26229882-26229929)
chr7 (16-63)||(26237279-26237326)
chr7 (18-64)||(16839717-16839763)
chr7 (18-60)||(20414576-20414618)
chr7 (18-60)||(20456193-20456235)
chr7 (189-246)||(14076542-14076599)
chr7 (189-246)||(14386570-14386627)
chr7 (11-60)||(19351400-19351449)
chr7 (13-54)||(22028323-22028364)
chr7 (32-65)||(22039899-22039932)
chr7 (11-63)||(18953269-18953321)
chr7 (11-63)||(18983316-18983368)
chr7 (11-63)||(18997962-18998014)
chr7 (18-70)||(19888056-19888108)
chr7 (3-51)||(22063318-22063366)
chr7 (3-51)||(22069787-22069835)
chr7 (3-51)||(22088269-22088317)
chr7 (11-63)||(22473477-22473529)
[»] chr6 (6 HSPs)
chr6 (111-277)||(24950264-24950427)
chr6 (206-253)||(6921509-6921556)
chr6 (15-63)||(33568660-33568708)
chr6 (206-253)||(6943113-6943160)
chr6 (11-42)||(24950446-24950477)
chr6 (11-53)||(24955888-24955930)
[»] chr1 (2 HSPs)
chr1 (3-60)||(39379425-39379482)
chr1 (9-60)||(17561110-17561162)
[»] scaffold0128 (3 HSPs)
scaffold0128 (12-63)||(8269-8320)
scaffold0128 (11-63)||(3830-3882)
scaffold0128 (11-63)||(25317-25369)
[»] chr4 (4 HSPs)
chr4 (11-60)||(3565401-3565450)
chr4 (12-60)||(1686649-1686697)
chr4 (14-60)||(3557386-3557432)
chr4 (11-63)||(3561319-3561371)
[»] scaffold0707 (1 HSPs)
scaffold0707 (15-63)||(5054-5102)
[»] chr5 (1 HSPs)
chr5 (11-63)||(42297807-42297859)
[»] scaffold0097 (2 HSPs)
scaffold0097 (202-253)||(16531-16582)
scaffold0097 (14-63)||(16712-16761)
[»] chr2 (4 HSPs)
chr2 (202-253)||(20712692-20712743)
chr2 (16-63)||(20975226-20975273)
chr2 (14-63)||(20712873-20712922)
chr2 (11-63)||(18921088-18921140)
[»] chr3 (1 HSPs)
chr3 (16-60)||(36339792-36339836)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 24391070 - 24391372
Alignment:
Q  7 agatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgtcgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391070 agatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgtcgt 24391169  T
Q  107 ggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391170 ggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatca 24391269  T
Q  207 tctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctcatgga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  24391270 tctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccgtgaagtgttgttgaatgagtcaaccatttgtgtgctcatgga 24391369  T
Q  307 ttg 309  Q
    |||    
T  24391370 ttg 24391372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 24385052 - 24385159
Alignment:
Q  202 gatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctc 301  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||  || |||  |||||||||||||||||||  |||   ||||||||||     
T  24385052 gatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaagtgttgttgaatgaaacaagtctttgtgtgctt 24385151  T
Q  302 atggattg 309  Q
    ||||||||    
T  24385152 atggattg 24385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 19637633 - 19637581
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  19637633 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 19637581  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 24384851 - 24384907
Alignment:
Q  7 agatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||  |||||||||||||| ||| |||||||||||| |||||||||||||||    
T  24384851 agatgtgaaggtttttagtttgggagatgatatttggagaagtattcaaagttttcc 24384907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 46769039 - 46769086
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  46769039 agttttgagtgtgggtgataatatttggagaactattcaaagttttcc 46769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 22021051 - 22021101
Alignment:
Q  13 gagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22021101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 24383803 - 24383848
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||    
T  24383803 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 24383848  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 19779275 - 19779327
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 70  Q
    |||| |||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcccattgtt 19779327  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 22036771 - 22036819
Alignment:
Q  15 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22036819  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 16846848 - 16846801
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  16846848 agtttttagtctgggcgataatgcttggagaaatattcaaagttttcc 16846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 22534303 - 22534358
Alignment:
Q  8 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  22534303 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 22534358  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26217632 - 26217679
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26217632 agtttttagtttgggtggtaactcttggagaaatattcaaagttttcc 26217679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26229882 - 26229929
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26229882 agtttttagtttgggtggtaactgttggagaaatattcaaagttttcc 26229929  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26237279 - 26237326
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26237279 agtttttagtttgggtgttaactgttggagaaatattcaaagttttcc 26237326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16839763 - 16839717
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttttccc 64  Q
    |||||||| |||| ||||| | |||||||||||||||||||||||||    
T  16839763 tttttagtctgggcgataacacttggagaaatattcaaagttttccc 16839717  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 20414576 - 20414618
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||||||||||||||| ||||||||| |||| |||||||    
T  20414576 tttttagtttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 20456193 - 20456235
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  20456193 tttttagtttgggtgataatgtttggagaagtattcaatgttt 20456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 14076542 - 14076599
Alignment:
Q  189 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 246  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14076599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 14386570 - 14386627
Alignment:
Q  189 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 246  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14386627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 19351449 - 19351400
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||| ||||||||||||| |||||||| |||||||| |||||| ||||||    
T  19351449 gtgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 22028323 - 22028364
Alignment:
Q  13 gagagtttttagtttgggtgataatatttggagaaatattca 54  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  22028323 gagagtttttagtttgggcgataatgtttggaggaatattca 22028364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 22039899 - 22039932
Alignment:
Q  32 gataatatttggagaaatattcaaagttttccca 65  Q
    |||||| |||||||||||||||||||||||||||    
T  22039899 gataatgtttggagaaatattcaaagttttccca 22039932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 18953321 - 18953269
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18953321 gtgagagttttcaattttggcgataatgtttggagacatattcaaagttttcc 18953269  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 18983368 - 18983316
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18983368 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18983316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 18998014 - 18997962
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18998014 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18997962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 19888108 - 19888056
Alignment:
Q  18 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 70  Q
    ||||||||||| ||||||||||||||||| ||||||  | |||||||| ||||    
T  19888108 tttttagtttgagtgataatatttggagagatattccgaattttcccattgtt 19888056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22063318 - 22063366
Alignment:
Q  3 caacagatgtgagagtttttagtttgggtgataatatttggagaaatat 51  Q
    ||||| |||| ||||||||||||||||| | |||| |||||||||||||    
T  22063318 caacaaatgtaagagtttttagtttgggcgttaatgtttggagaaatat 22063366  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22069787 - 22069835
Alignment:
Q  3 caacagatgtgagagtttttagtttgggtgataatatttggagaaatat 51  Q
    ||||| |||| ||||||||||||||||| | |||| |||||||||||||    
T  22069787 caacaaatgtaagagtttttagtttgggcgttaatgtttggagaaatat 22069835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22088269 - 22088317
Alignment:
Q  3 caacagatgtgagagtttttagtttgggtgataatatttggagaaatat 51  Q
    ||||| |||| ||||||||||||||||| | |||| |||||||||||||    
T  22088269 caacaaatgtaagagtttttagtttgggcgttaatgtttggagaaatat 22088317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 22473529 - 22473477
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||| || ||||||||||||||| ||||||||||  ||||||| |||||    
T  22473529 gtgagagtcttcagtttgggtgataatgtttggagaaaacttcaaagatttcc 22473477  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 277
Target Start/End: Complemental strand, 24950427 - 24950264
Alignment:
Q  111 gtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatcatctc 210  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||   | ||| |||   |   ||||| ||| ||||||||||||    
T  24950427 gtgtgtatttgagcggaactcttaattggttggtcattcgaaatgatattacatatgat---tggaataatcatactgttgagaattttgcgatcatctc 24950331  T
Q  211 acttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttg 277  Q
    |||||||| | ||| ||||||||||| |||||||||||||||| ||| |||  |||||| |||||||    
T  24950330 acttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaagggttgttg 24950264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 6921556 - 6921509
Alignment:
Q  206 atctcacttgatttggggatagagacatacacacaattgttgccccct 253  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  6921556 atctcacttgatttggggacagagacatatacacaattgttgctccct 6921509  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 33568660 - 33568708
Alignment:
Q  15 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  33568660 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 33568708  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 6943160 - 6943113
Alignment:
Q  206 atctcacttgatttggggatagagacatacacacaattgttgccccct 253  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  6943160 atctcacttgatttggggacagagacatatacaaaattgttgctccct 6943113  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 24950477 - 24950446
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttg 42  Q
    ||||||||||||||||||||||||||||||||    
T  24950477 gtgagagtttttagtttgggtgataatatttg 24950446  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24955930 - 24955888
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattc 53  Q
    |||||||||||||||||||| |||||||| |||||| ||||||    
T  24955930 gtgagagtttttagtttgggggataatatctggagagatattc 24955888  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 39379482 - 39379425
Alignment:
Q  3 caacagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  39379482 caaccgatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 17561162 - 17561110
Alignment:
Q  9 atgtgagagttttta-gtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||| |||||| |||||||||||||  |||||||| |||||||||||||    
T  17561162 atgtgagaatttttaagtttgggtgataacgtttggagagatattcaaagttt 17561110  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 8269 - 8320
Alignment:
Q  12 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  8269 tgagagtctttagtttgggtgataatgtttggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 3830 - 3882
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||||||||||||||   ||||| ||||||||| ||||| |||||||||    
T  3830 gtgagagtttttagtttggcgaataatgtttggagaactattccaagttttcc 3882  T

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Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 25317 - 25369
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||| ||| |||||||||||||||||| |||||||| |||||| ||| |||||    
T  25317 gtgaaagtctttagtttgggtgataatgtttggagacatattcgaagatttcc 25369  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3565401 - 3565450
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3565401 gtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  12 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 3557386 - 3557432
Alignment:
Q  14 agagtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3557386 agagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 3561371 - 3561319
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||| |||  |||| ||||||||| |||||||||||||| ||||||||||    
T  3561371 gtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcc 3561319  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 5054 - 5102
Alignment:
Q  15 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  5054 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 5102  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||| ||||||||||  |||||| ||||||||| |||||||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 16582 - 16531
Alignment:
Q  202 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 253  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  16582 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 16531  T

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Target: scaffold0097; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 16761 - 16712
Alignment:
Q  14 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  16761 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 16712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 20712743 - 20712692
Alignment:
Q  202 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 253  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  20712743 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 20712692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 20975226 - 20975273
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||| | |||||| || |||||||||||||||||||||||||||||    
T  20975226 agttttcactttgggcgaaaatatttggagaaatattcaaagttttcc 20975273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 20712922 - 20712873
Alignment:
Q  14 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  20712922 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 20712873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 18921140 - 18921088
Alignment:
Q  11 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 63  Q
    |||| |||||| |||||| |||||||| |||||||  ||||||||||||||||    
T  18921140 gtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttttcc 18921088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 36339792 - 36339836
Alignment:
Q  16 agtttttagtttgggtgataatatttggagaaatattcaaagttt 60  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagttt 36339836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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