View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227-Insertion-2 (Length: 1056)
Name: NF0227-Insertion-2
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 569 - 1049
Target Start/End: Complemental strand, 19344152 - 19343665
Alignment:
| Q |
569 |
agtatgagagagtagattatgtacttctgctgagagtgattcaatagcctcctccccaggatcttgtttgtcccaagggattccctttccatccacagaa |
668 |
Q |
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| T |
19344152 |
agtatgaaagagtaaattatgtacttctgctgagagtgattcaatagcctcctccccaggatcttgtttgtcccaagggattccctttccatccacagaa |
19344053 |
T |
|
| Q |
669 |
agatcagaaacaagatcataagattctaaaggttgtggttcttgcttttcgatgctatcggttaaccatgcctccctaaccacaggtatgcccctctccc |
768 |
Q |
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| T |
19344052 |
agatcagaaacaagatcataagattctaaaggttgtggttcttgcttttcgatgctgtcggttaaccatgcctccctaaccacaggtatgcccctctccc |
19343953 |
T |
|
| Q |
769 |
tatagtaagataggttgaaagttacttaagcatgtttatgtatcctttttcatgccatcagaataaaattgaaagccaaaaaagtttatatagatgcatc |
868 |
Q |
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| T |
19343952 |
tatagtaagataggttgaaagttacttaagcatgtttatgtatcctttttcatgccatcagaataaaattgaaagccaaaaaagttaatatagatgcatc |
19343853 |
T |
|
| Q |
869 |
ttttctatgtgaccatgtttttcttattgtcatgccataaattttgattacacttacatggcatctgcaagtttggatg-tccacctcgatctcgctcgg |
967 |
Q |
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| T |
19343852 |
ttttctatgtgaccatgtttttcttattgtcatgccataaattttgattacacttacatggcatctgcaagtttggatgttccacctcgatctcgctcgg |
19343753 |
T |
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| Q |
968 |
caggtgaagccacc-aacaacttgct-ctg-aaaatttgactaa-caggttatagaaatt-ctagc-acagaaggatgaaaaaagaaa |
1049 |
Q |
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| T |
19343752 |
caggtgaagccaccaaacaacttgctcctgaaaaatttaactaaccaggttacagaaattcctagcaacagaaggatgaaaatagaaa |
19343665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 276 - 558
Target Start/End: Complemental strand, 19344469 - 19344187
Alignment:
| Q |
276 |
aatgtcaataaggttgtaaccaaaaaataaatgtcaataaggactaaagctgcaattgatcttgttagtattattactcattaagttttctcccttggtc |
375 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19344469 |
aatgtcaataaggttgtaaccaaaaaacaaatgtcaataaggactaaagctgcaattgatcttgttagtattattactcattaagttttctcccttggtc |
19344370 |
T |
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| Q |
376 |
acaaacagagaaggcacagttgtataatatcccatctttttcaaatatctttccatcttgctcatgcaatttggtatctttgtagacccctctcttccca |
475 |
Q |
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| T |
19344369 |
acaaagggagaaggcacagttgtataatatcccatctttttcaaatatctttccatcttgctcatgcaatttggtatctttgtagacccctctcttccca |
19344270 |
T |
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| Q |
476 |
taaagcttgagctgttaacaatcaccaaattttatcaaacagtcacaagggaagggacctgtatttcttctataaaataatga |
558 |
Q |
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| T |
19344269 |
taaagcttgagctgttaacaatcaccaaattttatcaaacagtcaaaagggaagggacctatatttcttctataaaataatga |
19344187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 19344767 - 19344497
Alignment:
| Q |
7 |
agtaatatatatgtaccatgtcaatggggtaaaacttcagtggtttcttttgaaatttcttatctctttcccatgattcaaactcatttcctgktatttc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
19344767 |
agtaatatatatgtaccatgtcaatggggtaaaacttcagtggtttcttttgaaatttcttctctctttcccatgattcaaactcatttcctgttatttc |
19344668 |
T |
|
| Q |
107 |
ctcaaagagcctcacaaactctttgatagcattgtccacattctcgcactcttctagtcgctcctccgcgtttggatcgtcccccactcttcctttcttg |
206 |
Q |
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| T |
19344667 |
ctcaaagagcctcacaaactctttgatagcattgtccacattctcgcactcttctagtcgctcctccgcgcttggatcgtcccccactcttcctttcttg |
19344568 |
T |
|
| Q |
207 |
aaatacaaatgcaaagaattctctgggacgacaatcagttgcatgacacagtagctgccccaaattaacaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19344567 |
aaatacaaatgcaaagaattctctgggacgacaatcagttgcatgacacagtagctgccccaaattaacaa |
19344497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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