View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0227-Insertion-4 (Length: 733)

Name: NF0227-Insertion-4
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0227-Insertion-4
NF0227-Insertion-4
[»] chr4 (47 HSPs)
chr4 (8-729)||(7822844-7823564)
chr4 (8-729)||(7813355-7814072)
chr4 (8-729)||(7800512-7801232)
chr4 (128-319)||(7790081-7790275)
chr4 (128-319)||(7771396-7771590)
chr4 (36-344)||(7237584-7237895)
chr4 (496-564)||(7908665-7908733)
chr4 (496-564)||(7790443-7790511)
chr4 (496-572)||(7878746-7878822)
chr4 (496-563)||(7773456-7773523)
chr4 (498-564)||(7771760-7771826)
chr4 (128-325)||(7773691-7773900)
chr4 (496-572)||(49043790-49043866)
chr4 (496-566)||(48864398-48864468)
chr4 (11-107)||(7908209-7908305)
chr4 (191-325)||(7877807-7877941)
chr4 (486-564)||(48156059-48156137)
chr4 (496-558)||(48853044-48853106)
chr4 (496-554)||(49038518-49038576)
chr4 (496-549)||(48147358-48147411)
chr4 (185-258)||(49048508-49048581)
chr4 (117-162)||(50669042-50669087)
chr4 (190-249)||(7786524-7786583)
chr4 (496-555)||(7786827-7786886)
chr4 (123-162)||(37827034-37827073)
chr4 (496-555)||(45371713-45371772)
chr4 (498-551)||(7237386-7237439)
chr4 (50-107)||(7790006-7790063)
chr4 (50-99)||(7877640-7877689)
chr4 (130-171)||(7908325-7908366)
chr4 (120-176)||(7765605-7765661)
chr4 (120-176)||(7786427-7786483)
chr4 (496-564)||(45384522-45384590)
chr4 (496-564)||(48870923-48870991)
chr4 (496-564)||(48876227-48876295)
chr4 (496-564)||(48886609-48886677)
chr4 (496-544)||(48903318-48903366)
chr4 (496-572)||(49048177-49048253)
chr4 (500-552)||(50666682-50666734)
chr4 (190-249)||(7765702-7765761)
chr4 (496-555)||(7766005-7766064)
chr4 (128-171)||(7877727-7877770)
chr4 (122-161)||(50250831-50250870)
chr4 (41-107)||(7773930-7773996)
chr4 (50-107)||(7771321-7771378)
chr4 (503-552)||(37826632-37826681)
chr4 (499-564)||(48863631-48863696)
[»] chr5 (3 HSPs)
chr5 (496-552)||(9120126-9120182)
chr5 (499-555)||(42561972-42562028)
chr5 (496-537)||(179421-179462)
[»] chr8 (3 HSPs)
chr8 (122-181)||(12200299-12200358)
chr8 (122-181)||(12444727-12444786)
chr8 (338-375)||(4962336-4962373)
[»] chr6 (4 HSPs)
chr6 (120-171)||(21979678-21979729)
chr6 (497-555)||(21979267-21979325)
chr6 (496-549)||(21016184-21016237)
chr6 (191-248)||(21979577-21979634)
[»] chr3 (6 HSPs)
chr3 (496-570)||(11024127-11024201)
chr3 (496-564)||(11015121-11015189)
chr3 (486-551)||(11005571-11005636)
chr3 (496-564)||(47451530-47451598)
chr3 (123-162)||(11006002-11006041)
chr3 (123-162)||(11024577-11024616)
[»] chr7 (2 HSPs)
chr7 (122-171)||(48883793-48883842)
chr7 (496-555)||(48884187-48884246)
[»] chr1 (5 HSPs)
chr1 (499-554)||(24367531-24367586)
chr1 (499-552)||(24310582-24310635)
chr1 (127-162)||(24310168-24310203)
chr1 (499-554)||(24416144-24416199)
chr1 (502-555)||(24323139-24323192)


Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 8 - 729
Target Start/End: Original strand, 7822844 - 7823564
Alignment:
Q  8 gtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822844 gtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 7822943  T
Q  108 caaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7822944 caaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacattnggaggttttc 7823043  T
Q  208 tcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  7823044 tcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggctctattc 7823143  T
Q  308 attggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823144 attggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttgg 7823243  T
Q  408 cggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823244 cggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtg 7823343  T
Q  508 ttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatgtactccacaa 607  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823344 tttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatgtactccacaa 7823443  T
Q  608 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaaagggcagctgttagagcatcaatcattctgtaacagtc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7823444 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagt-aaagggcagctgttagagcatcaatcattctgtaacagtc 7823542  T
Q  708 catccaaagttgtcttgtatac 729  Q
    |||||||||||||| |||||||    
T  7823543 catccaaagttgtcatgtatac 7823564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 729
Target Start/End: Original strand, 7813355 - 7814072
Alignment:
Q  8 gtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7813355 gtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacccgtgtcttcttttgattccaa 7813454  T
Q  108 caaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813455 caaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttc 7813554  T
Q  208 tcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattc 307  Q
    || ||||||||||||||||||||||||||||| |||||| || ||||||| | ||   |||||||||||||||||||||||||||||||||  |||||||    
T  7813555 tcctttccagataatacctggaaagaaattgaaggtactaacttcgcttacgctg---atccttctcatagaaaagggtttctatttaatgaggctattc 7813651  T
Q  308 attggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttgg 407  Q
    |||||||||||||| ||   |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||    
T  7813652 attggctggcttggagttgtgatttaaatttggatgttattattgtctttgatttaattaaaaggaaactgattgaaatacctcttcaaaatgatttcgg 7813751  T
Q  408 cggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7813752 cggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaattgaaatatgggtg 7813851  T
Q  508 ttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatgtactccacaa 607  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813852 ttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatgtactccacaa 7813951  T
Q  608 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaaagggcagctgttagagcatcaatcattctgtaacagtc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  7813952 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagt-aaagggcagctgttagagcatcaatcattctgtaacgctc 7814050  T
Q  708 catccaaagttgtcttgtatac 729  Q
    |||||||||||||| |||||||    
T  7814051 catccaaagttgtcatgtatac 7814072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 8 - 729
Target Start/End: Original strand, 7800512 - 7801232
Alignment:
Q  8 gtggagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7800512 gtggagggtttttatttttataccgttttccagacatttacctgtggaatccatctactggatttaagaaacaaatacccgtgtcttcttttgattccaa 7800611  T
Q  108 caaaccacatgataatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttc 207  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7800612 caaaccatatgataatttatatggttttggttatgaccagtcaagagatgagtacgtgctggttgtattttcccatgtttcatcacatttggaggttttc 7800711  T
Q  208 tcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattc 307  Q
    |||||||||||||||||||||||||||||||| |||||| || | | ||| | ||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  7800712 tcgtttccagataatacctggaaagaaattgacggtactaactttgattacgctgtcgatccttctcatataaaagggttgctatttaatggggctattc 7800811  T
Q  308 attggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaattaaaaggaaactgattgaaacacctattcaaaatgattttgg 407  Q
    |||||||||||||| |||  |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  7800812 attggctggcttggagtcgtgatttagatttgaatgttattattgtgtttgatttaattaaaaggaaactgattgaaatacctcttcaaaatgattttgg 7800911  T
Q  408 cggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcatatggattctaacttctgatggtgaaagaatggaaatatgggtg 507  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7800912 cggacttactttagatgctgattctggtttgtgggtattttgcgaaactctgagcatatggattctaacttctgatggtgaaagaattgaaatatgggtg 7801011  T
Q  508 ttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaatgtttcccctatgtactccacaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7801012 ttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattccagataacttgaacgtttcccctatgtactccacaa 7801111  T
Q  608 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaaagggcagctgttagagcatcaatcattctgtaacagtc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7801112 aaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagt-aaagggcagctgttaaagcatcaatcattctgtaacagtc 7801210  T
Q  708 catccaaagttgtcttgtatac 729  Q
    |||||||||||||| |||||||    
T  7801211 catccaaagttgtcatgtatac 7801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 7790081 - 7790275
Alignment:
Q  128 atggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctg 227  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||| |||  ||||||||| ||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggttgaattttcccatgtttcatcacatttggaggttttctcatttagagataatacgtg 7790180  T
Q  228 gaaagaaattgatgg---tactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 319  Q
    |||||||||||||||   ||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7790181 gaaagaaattgatggtaatactcacttcccttatgttgtcgttccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 7771396 - 7771590
Alignment:
Q  128 atggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctg 227  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||| |||  ||||||||| ||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggttgaattttcccatgtttcatcacatttggaggttttctcatttagagataatacgtg 7771495  T
Q  228 gaaagaaattgatgg---tactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 319  Q
    |||||||||||||||   ||||||| || ||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7771496 gaaagaaattgatggtcatactcacttcccttatgtcgtcgttccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7771590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 36 - 344
Target Start/End: Complemental strand, 7237895 - 7237584
Alignment:
Q  36 tccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaacaaacca-catgataatctatatggttt 134  Q
    |||| |||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||   |  | || | |  ||   |||||||    
T  7237895 tccaaacatctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaaattattagcaagttg-tc---atggttt 7237800  T
Q  135 tggttatgaccagtcaagagatgattacgtgctggttgtattttcccatgtttcgtcacatttggaggttttctcgtttccagataatacctggaaagaa 234  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||  |||||||||    
T  7237799 tggttatgaccagtcaagagatgattacttggtggttgtattttcccatgtttcatcacatttggaggttttctcttttagagataatatgtggaaagaa 7237700  T
Q  235 attgatggtactcacatcgcttatg------ttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaag 328  Q
    |||||| ||| |||  || |||| |      |||||| |||||| ||  |||||||||||||||||||||| | |||||||||||| ||||  || |  |    
T  7237699 attgattgtattcatttcccttacgttctcattgtcgttccttcccagggaaaagggtttctatttaatggggttattcattggcttgcttatcgccgtg 7237600  T
Q  329 atttagaattggatgt 344  Q
    ||||||| ||||||||    
T  7237599 atttagatttggatgt 7237584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 7908665 - 7908733
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7908665 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgat 7908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 7790443 - 7790511
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7790443 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgat 7790511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 7878746 - 7878822
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 572  Q
    |||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||    
T  7878746 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcc 7878822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 563
Target Start/End: Complemental strand, 7773523 - 7773456
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttga 563  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  7773523 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttctgttga 7773456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 7771760 - 7771826
Alignment:
Q  498 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgat 7771826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 128 - 325
Target Start/End: Complemental strand, 7773900 - 7773691
Alignment:
Q  128 atggttttggttatgaccagtcaagagatgattacgtgctggttgtattttcccat------------gtttcgtcacatttggaggttttctcgtttcc 215  Q
    ||||||||||||||||||||  ||||||||||||| || |||||||||| ||| ||            |||||  ||| |||| || ||||||| |||      
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcctatcatataaccgtagtttcaacacgtttgaagtttttctcatttag 7773801  T
Q  216 agataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttctatttaatggagctattcattggctg 315  Q
    ||||||||| |||||||||| ||| ||| ||| | | ||||||  ||||   |||||||  ||||||||||||||||||||||| |||||||||||| ||    
T  7773800 agataatacatggaaagaaactgagggtgctccctttgcttattgtgtcatcccttctcgcagaaaagggtttctatttaatggggctattcattggttg 7773701  T
Q  316 gcttggcgtc 325  Q
    |||| |||||    
T  7773700 gctttgcgtc 7773691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 49043866 - 49043790
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 572  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| ||| ||||||||| ||||| ||||| |||||||    
T  49043866 gaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcc 49043790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 496 - 566
Target Start/End: Original strand, 48864398 - 48864468
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgattt 566  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| | |||||||||| || |||||||    
T  48864398 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattt 48864468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 7908209 - 7908305
Alignment:
Q  11 gagggtttttatttttataccgttttccagacatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    |||||||| || |||| ||||||  ||||||||| ||| ||||||||||||||||||||||||| ||||| ||||   ||||| || ||||||||||    
T  7908209 gagggtttatacttttgtaccgtcctccagacatctacatatggaatccatctactggatttaaaaaacatatacacctgtctcctgttgattccaa 7908305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 325
Target Start/End: Original strand, 7877807 - 7877941
Alignment:
Q  191 cacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcacatcgcttatgttgtcgatccttctcatagaaaagggtttct 290  Q
    |||||||| || ||||||| |||  ||||||||| |||||||||| |||  |||||| | || |||||| ||||   |||||||  ||||||||||| ||    
T  7877807 cacatttgaagtttttctcatttagagataatacatggaaagaaactgagagtactcccttcccttatgctgtcatcccttctcgcagaaaagggttgct 7877906  T
Q  291 atttaatggagctattcattggctggcttggcgtc 325  Q
    ||||||||| | | |||||||| |||||| |||||    
T  7877907 atttaatggggttgttcattggttggctttgcgtc 7877941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 564
Target Start/End: Complemental strand, 48156137 - 48156059
Alignment:
Q  486 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    ||||||| | |||||||||||| |||| || |||||||||||||| ||||||| |||||||||||| ||| || |||||    
T  48156137 tgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgat 48156059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 558
Target Start/End: Original strand, 48853044 - 48853106
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttct 558  Q
    |||||||||||  ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  48853044 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 48853106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 49038576 - 49038518
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 554  Q
    |||||||||||| ||||||| |||||||| ||||||||||||| ||| |||||||||||    
T  49038576 gaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 48147411 - 48147358
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 549  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  48147411 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 49048581 - 49048508
Alignment:
Q  185 tttcgtcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcacatcgcttat 258  Q
    |||| |||||||||||| ||||||||||   ||||||||  |||||||||||||| |||||||||||| |||||    
T  49048581 tttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttat 49048508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 50669042 - 50669087
Alignment:
Q  117 tgataatctatatggttttggttatgaccagtcaagagatgattac 162  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||    
T  50669042 tgatcatctatatggttttggttatgaccggtcaagagatgattac 50669087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 7786524 - 7786583
Alignment:
Q  190 tcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcac 249  Q
    ||||||||||||||||||||||||  ||| ||||| ||||||||||| || |||||||||    
T  7786524 tcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7786583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 7786827 - 7786886
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    |||||||||||| ||||||| ||||| |||||||  ||||||||||| ||||||||||||    
T  7786827 gaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 37827073 - 37827034
Alignment:
Q  123 tctatatggttttggttatgaccagtcaagagatgattac 162  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattac 37827034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 555
Target Start/End: Complemental strand, 45371772 - 45371713
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  45371772 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 551
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  498 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 551  Q
    |||||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 7790006 - 7790063
Alignment:
Q  50 tatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    ||||||||||||| ||||||||||| | ||||||||| |||||| | |||||||||||    
T  7790006 tatggaatccatccactggatttaaaacacaaataccggtgtctccctttgattccaa 7790063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 7877640 - 7877689
Alignment:
Q  50 tatggaatccatctactggatttaagaaacaaataccagtgtcttctttt 99  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||| |||||    
T  7877640 tatggaatccatccactggatttaaaaaacaaatacctgtgtctcctttt 7877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 7908325 - 7908366
Alignment:
Q  130 ggttttggttatgaccagtcaagagatgattacgtgctggtt 171  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtt 7908366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 7765605 - 7765661
Alignment:
Q  120 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 176  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7765605 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 7765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 7786427 - 7786483
Alignment:
Q  120 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 176  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7786427 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 7786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 45384590 - 45384522
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||||| ||||||| || |||||||||||||||||||  || |||| ||||||| || |||||    
T  45384590 gaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgat 45384522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 48870923 - 48870991
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48870923 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48870991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 48876227 - 48876295
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48876227 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48876295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 48886609 - 48886677
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48886609 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48886677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 48903318 - 48903366
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaa 544  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  48903318 gaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 572
Target Start/End: Complemental strand, 49048253 - 49048177
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 572  Q
    |||||||||||| ||||||| || |||||||||||||| |||| ||| ||| ||||| |||||  |||| |||||||    
T  49048253 gaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcc 49048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  500 tatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 552  Q
    |||||||| || |||| |||||||||||||| ||||||| |||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 7765702 - 7765761
Alignment:
Q  190 tcacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactcac 249  Q
    |||||||||||| |||||||||||  ||| ||||| ||||||||||| || |||||||||    
T  7765702 tcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7765761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 7766005 - 7766064
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||| ||| || |||||||||    
T  7766005 gaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 7877727 - 7877770
Alignment:
Q  128 atggttttggttatgaccagtcaagagatgattacgtgctggtt 171  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtt 7877770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 50250870 - 50250831
Alignment:
Q  122 atctatatggttttggttatgaccagtcaagagatgatta 161  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  50250870 atctatatggttttggttatgaccactcaacagatgatta 50250831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 7773996 - 7773930
Alignment:
Q  41 acatttacctatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    |||| ||| ||||||||||||| ||||||||||| ||||||||||| | |||| |||||  ||||||    
T  7773996 acatctacatatggaatccatccactggatttaaaaaacaaatacctgggtctccttttcgttccaa 7773930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 7771321 - 7771378
Alignment:
Q  50 tatggaatccatctactggatttaagaaacaaataccagtgtcttcttttgattccaa 107  Q
    ||||||||||||| | ||||||||| | ||||||||| |||||| | |||||||||||    
T  7771321 tatggaatccatccattggatttaaaacacaaataccggtgtctccctttgattccaa 7771378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  503 gggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 552  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 564
Target Start/End: Original strand, 48863631 - 48863696
Alignment:
Q  499 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    ||||||||| || |||| |||  ||||||||| ||||||| |||||||||||| |||||| |||||    
T  48863631 atatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgtgctttctattgat 48863696  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 552
Target Start/End: Original strand, 9120126 - 9120182
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 552  Q
    |||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||    
T  9120126 gaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 555
Target Start/End: Complemental strand, 42562028 - 42561972
Alignment:
Q  499 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| | ||||||||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 179421 - 179462
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttgg 537  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  179421 gaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12200299 - 12200358
Alignment:
Q  122 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 181  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 12200358  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12444727 - 12444786
Alignment:
Q  122 atctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtattttccc 181  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||||| |||| ||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtccc 12444786  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 4962373 - 4962336
Alignment:
Q  338 tggatgttattattgtctttgatttaattaaaaggaaa 375  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4962373 tggatgttattattgtctttgatttaatggaaaggaaa 4962336  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 21979729 - 21979678
Alignment:
Q  120 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggtt 171  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  21979729 taatctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  497 aaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||||||| |  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 21016184 - 21016237
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 549  Q
    |||||||||||  ||||||| |||||||| ||||||||||||| ||| ||||||    
T  21016184 gaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 21979634 - 21979577
Alignment:
Q  191 cacatttggaggttttctcgtttccagataatacctggaaagaaattgatggtactca 248  Q
    ||||||||||||||||||| ||   |||||||||||||||| ||||||| ||| ||||    
T  21979634 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctca 21979577  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 570
Target Start/End: Complemental strand, 11024201 - 11024127
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcatt 570  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || ||| |||||| ||||    
T  11024201 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatt 11024127  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 11015189 - 11015121
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||||  ||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||    
T  11015189 gaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 11015121  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 11005636 - 11005571
Alignment:
Q  486 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 551  Q
    ||||| ||| |||||||||||  ||||||| |||||||||||||||||||||| |||  |||||||    
T  11005636 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 47451598 - 47451530
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 564  Q
    |||||||||||| ||||||| ||||||||  ||||||||||| | || |||||||||||| || |||||    
T  47451598 gaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgat 47451530  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 11006041 - 11006002
Alignment:
Q  123 tctatatggttttggttatgaccagtcaagagatgattac 162  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattac 11006002  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 11024616 - 11024577
Alignment:
Q  123 tctatatggttttggttatgaccagtcaagagatgattac 162  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattac 11024577  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 48883793 - 48883842
Alignment:
Q  122 atctatatggttttggttatgaccagtcaagagatgattacgtgctggtt 171  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||    
T  48883793 atctatatggttttggttatgacccgtcaagagatgattacatggtggtt 48883842  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 48884187 - 48884246
Alignment:
Q  496 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    ||||||| |||| ||||||| ||||||||||||  |||||||| ||| ||||||||||||    
T  48884187 gaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  499 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 554  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 24310582 - 24310635
Alignment:
Q  499 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 552  Q
    ||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 24310168 - 24310203
Alignment:
Q  127 tatggttttggttatgaccagtcaagagatgattac 162  Q
    |||||||||||||||||| |||||||||||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattac 24310203  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 24416144 - 24416199
Alignment:
Q  499 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 554  Q
    ||||||||| ||||||| ||||||| ||| || ||||||| |||||||||||||||    
T  24416144 atatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  502 tgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 555  Q
    |||||| ||||||| ||||||||||| || |||| || ||||||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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