View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0227_high_4 (Length: 390)
Name: NF0227_high_4
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 29 - 379
Target Start/End: Original strand, 38813855 - 38814205
Alignment:
| Q |
29 |
attttcctcggctcgaattctcgtattagtaaagacatcaaagagataaagtttggaggaatttgaattttgaaaaactttaatgatcccaccttgatta |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38813855 |
attttcctcggctcgaattctcgtattagtgaagagatcaaagagataaagtttggaggaatttgaattttgaaaaactttaatgatcccaccttgatta |
38813954 |
T |
|
| Q |
129 |
gaacaagaagttgaagggttgtgatcatgtggtgatggttcaatgcggtatattttggtttggagtagaaaataattttgatgtggaatgcaaaggttgt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38813955 |
gaacaagaagttgaagggttgtgatcatgtggtgagggttcaatgtggtatattttggtttggagtagaaaataattttgatgtggaatgcaaaggttgt |
38814054 |
T |
|
| Q |
229 |
gagaggcaggtggaggaggaagaagagagcgccaaaatctacaaatactacggaatcgaacaacatcaatcgtagtgttcagttttttggatataattac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814055 |
gagaggcaggtggaggaggaagaagagagcgccaaaatctacaaatactacggaatcgaacaacatcaatcgtagtgttcagttttttggatataattac |
38814154 |
T |
|
| Q |
329 |
ccacaaatcttcaagaagatttgagtttgaacactccactaccttattcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814155 |
ccacaaatcttcaagaagatttgagtttgaacactccactaccttattcat |
38814205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 38825758 - 38826024
Alignment:
| Q |
65 |
atcaaagagataaagtttggaggaatttgaattttgaaaaactttaatgatcccaccttgattagaacaagaag---ttgaagggttgtgatcatgtggt |
161 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || |||||||||||||||| || ||||||||||||||||||| |||| || | |||||||| | |
|
|
| T |
38825758 |
atcaaagagataaaatttgaaggaatttggcttctgaaaaactttaatgagccacccttgattagaacaagaagaagttgatggttcgtgatcatacaat |
38825857 |
T |
|
| Q |
162 |
gatggttcaatgcggtatattttggtttggagtagaaaataattttgatgtggaatgcaaaggttgtgagaggcaggtggaggaggaagaagagagcgcc |
261 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| | | ||||||||||||| |||||| ||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
38825858 |
gatggttgaatgcggtatattttggtttgtagtagaacaaatccttgatgtggaatggaaaggtcgtgagagagaggtggaggaggaagaaaagagtgcc |
38825957 |
T |
|
| Q |
262 |
aaaatctacaaatactacggaatcgaacaacatcaatcgtagtgttcagttttttggatataattaccca |
331 |
Q |
| |
|
| | |||||| |||| ||||||||||||||| | ||||| ||||||||||| |||||||| |||| |
|
|
| T |
38825958 |
atgaactacaagtactgcggaatcgaacaaca---agtgtagttttcagtttttttaatataattgccca |
38826024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 155 - 350
Target Start/End: Original strand, 35549281 - 35549473
Alignment:
| Q |
155 |
atgtggtgatggttcaatgcggtatattttggtttggagtagaaaataattttgatgtggaatgcaaaggttgtgagaggcaggtggaggaggaagaaga |
254 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||| |||||||||| || ||| |||||||| | | | ||||||| | |||| ||| | |||| |
|
|
| T |
35549281 |
atgtgatgctggttcaatgcggtatattttagtttggtgtagaaaatatttaagatatggaatgcgaggtgtatgagaggaa---ggagaagggacaaga |
35549377 |
T |
|
| Q |
255 |
gagcgccaaaatctacaaatactacggaatcgaacaacatcaatcgtagtgttcagttttttggatataattacccacaaatcttcaagaagattt |
350 |
Q |
| |
|
||||| || || | ||| |||||||| |||||||||||||||| |||||||| || ||||| | ||||| || ||| || |||| | |||||||| |
|
|
| T |
35549378 |
gagcgacataaacgacagatactacgaaatcgaacaacatcaagagtagtgttgagattttttgctataactaaccataactctttaggaagattt |
35549473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 35520420 - 35520248
Alignment:
| Q |
161 |
tgatggttcaatgcggtatattttggtttggagtagaaaataattttgatgtggaatgcaaaggttgtgagaggcaggtggaggaggaagaagagagcgc |
260 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||||||| | || || ||| ||| |||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
35520420 |
tgatggttgaatgcgatatattttggtttgcagtagaaaataaagatcatatgaaatacaatggttgttagagggagatggagcgggaagaagagagcga |
35520321 |
T |
|
| Q |
261 |
caaaatctacaaatactacggaatcgaacaacatcaatcgtagtgttcagttttttggatataattacccaca |
333 |
Q |
| |
|
| || ||| | || |||||||||||||||||||| || || |||| |||| | ||||||||| |||||| |
|
|
| T |
35520320 |
aataaactatcgacaccgcggaatcgaacaacatcaatagtggtattcaattttcttgatataattgcccaca |
35520248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2105 times since January 2019
Visitors: 2396