View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_1 (Length: 786)
Name: NF0227_low_1
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 14405764 - 14406087
Alignment:
| Q |
30 |
gttaggaatcttaaaggatggggttttcagcctaagaggaatgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt |
129 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14405764 |
gttaggaatcttaaaggatgggattttcagcctaagaggactgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt |
14405863 |
T |
|
| Q |
130 |
tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggtactttaaaacattgtggttatttatgtgctaatgtatcttatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14405864 |
tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggtactttaaaacattgtggttatttatgtgctaatgtatcttatct |
14405963 |
T |
|
| Q |
230 |
atatctattcaattcaaagaaatgtagtgtgtgagttttaaggtaatgtttgtcactttgtcgacacaccaaaggaaatctttcggggatgacatgaggc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
14405964 |
atatctattcaattcaaagaaatgtagtgtgtgagttttaaggtaatgtttgtcactttgtctacacactaaaggaaatcttttcttgatgacatgaggc |
14406063 |
T |
|
| Q |
330 |
gtgtttgtatgaagtcattggaaa |
353 |
Q |
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||||||| ||||||| |||||||| |
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| T |
14406064 |
gtgtttggatgaagtaattggaaa |
14406087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 569 - 776
Target Start/End: Original strand, 14406303 - 14406510
Alignment:
| Q |
569 |
taggggtcagtttgaaagttttaaaaaattgggaccaacttgcaaaattttnnnnnnnn-gttaagaaccaatttgatattcacattgcatagagtaagg |
667 |
Q |
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| T |
14406303 |
taggggttagtttgaaagttttaaaaaattgggaccaacttgcaaaattttaaaaaaaaagttaagaaccaatttgatattcacattgtatagagtaagg |
14406402 |
T |
|
| Q |
668 |
aagaaatttcaaatttctagctttttaggtgtcatttgacagatgtgacactcttcaacgaaggatgtgcaagtttaaaatagtaaagcaatccaattgg |
767 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
14406403 |
aagaaatttcaaatttctagctttt-aggtgtcatttgacagatgtgacactcttcaacgaaggacgtgcaattttaaaatagtaaagcaatccaattgg |
14406501 |
T |
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| Q |
768 |
ctgtctgtg |
776 |
Q |
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||||||||| |
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| T |
14406502 |
ctgtctgtg |
14406510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 14435354 - 14435510
Alignment:
| Q |
30 |
gttaggaatcttaaaggatggggttttcagcctaagaggaatgtttatttggtttttgctcctgatgaggaggttggtggacatgatggtgcggagaagt |
129 |
Q |
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||||||| ||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||| |
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| T |
14435354 |
gttaggattcttaaaagttgggattttcagcctaagaggactgtttatttggtttttgctcctgatgaggagattggtggtcatgatggtgctgaaaagt |
14435453 |
T |
|
| Q |
130 |
tttctctttcaaaggtttttcaagaattgaatgttggtgtagtgcttgatgaaggta |
186 |
Q |
| |
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|||| ||||| |||| |||||| || |||||||||||| |||||||||||||||||| |
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|
| T |
14435454 |
tttcgctttcgaaggattttcaggacttgaatgttggtatagtgcttgatgaaggta |
14435510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 14406170 - 14406248
Alignment:
| Q |
436 |
tgtattgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact |
514 |
Q |
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| T |
14406170 |
tgtattgttaacatttttgggttgcctttataaattttaaaagttttgagtcatacttgaaatttgaaaaataggtact |
14406248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 33977643 - 33977710
Alignment:
| Q |
438 |
tattgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaa |
505 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||| ||| || |||| |||||||| ||||||| |
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| T |
33977643 |
tattgttaacatttttgggctatttttataaaatttaaatgttatgggtcaaacttgaaaattgaaaa |
33977710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 676
Target Start/End: Original strand, 14137327 - 14137369
Alignment:
| Q |
634 |
aaccaatttgatattcacattgcatagagtaaggaagaaattt |
676 |
Q |
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||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
14137327 |
aaccaatttgagattcacattgtatagagtaatgaagaaattt |
14137369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 682
Target Start/End: Original strand, 30139695 - 30139747
Alignment:
| Q |
630 |
taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatt |
682 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| ||||| ||||| |
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|
| T |
30139695 |
taagaaccaatttaatattcacattgtatagagtaaggaagcaatttaaaatt |
30139747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 612
Target Start/End: Original strand, 26252086 - 26252125
Alignment:
| Q |
573 |
ggtcagtttgaaagttttaaaaaattgggaccaacttgca |
612 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| |
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| T |
26252086 |
ggtcagtttggaagtttaaaaaaattgggaccaacttgca |
26252125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 5900873 - 5900806
Alignment:
| Q |
439 |
attgttaacatttttgggttgcttttataaattttaaaagttttgagtcatacttgaaatttgaaaaa |
506 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||||||||||||| |||| |||||||| |||||| |
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| T |
5900873 |
attgttaacatttttgggctacatttataaattttaaaagttttgggtcaattttgaaattggaaaaa |
5900806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 3271390 - 3271347
Alignment:
| Q |
439 |
attgttaacatttttgggttgcttttataaattttaaaagtttt |
482 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
3271390 |
attgtgaatatttttgggttgcttttataaattttaaaagtttt |
3271347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 684
Target Start/End: Complemental strand, 41311799 - 41311746
Alignment:
| Q |
630 |
taagaaccaatttgatattcacattgcatagagtaaggaagaaatttcaaatttc |
684 |
Q |
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||||||||||||||| |||||||||| || |||||| |||| ||||||||||||| |
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| T |
41311799 |
taagaaccaatttga-attcacattgtattgagtaaagaaggaatttcaaatttc |
41311746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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