View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_11 (Length: 355)
Name: NF0227_low_11
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_11 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 38 - 350
Target Start/End: Complemental strand, 37050843 - 37050531
Alignment:
| Q |
38 |
ctaggcatgagttgatgtgattttctgtgttttatgtaggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgc |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050843 |
ctaggcatgagttgatgtgattttctgtgttttatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgc |
37050744 |
T |
|
| Q |
138 |
acttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttca |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050743 |
acttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttca |
37050644 |
T |
|
| Q |
238 |
gcagagcgagaaattgtaagggatatgaaggagaaattggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
37050643 |
gcagagcgagaaattgtaagggatatgaaggagaaattggcttatattgctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttg |
37050544 |
T |
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| Q |
338 |
agaagacctatga |
350 |
Q |
| |
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||||||||||||| |
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| T |
37050543 |
agaagacctatga |
37050531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 8689579 - 8689747
Alignment:
| Q |
86 |
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac |
185 |
Q |
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| T |
8689579 |
tggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggtcgtgaccttac |
8689678 |
T |
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| Q |
186 |
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt |
254 |
Q |
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||| |||||||||||||| || || ||||| || |||| ||||| |||||||||||||||||||| |
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| T |
8689679 |
cgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgt |
8689747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 350
Target Start/End: Original strand, 68182 - 68458
Alignment:
| Q |
74 |
taggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcagg |
173 |
Q |
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| T |
68182 |
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg |
68281 |
T |
|
| Q |
174 |
tcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaa |
273 |
Q |
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|||||||||||| || || | ||||| || |||||||||||||| ||| |||||||||| |||| ||||| ||||| || || || ||||||| ||| |
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| T |
68282 |
tcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaa |
68381 |
T |
|
| Q |
274 |
ttggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttgagaagacctatga |
350 |
Q |
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| | || |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||||||||| |||||| |
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| T |
68382 |
ctatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaagagctatga |
68458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 350
Target Start/End: Original strand, 41388147 - 41388422
Alignment:
| Q |
75 |
aggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggt |
174 |
Q |
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|||| |||||||||| ||||| |||||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||||||| | ||| | ||||| |
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| T |
41388147 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
41388246 |
T |
|
| Q |
175 |
cgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaat |
274 |
Q |
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||||| ||||||||||| |||||||| || | ||||||||||| || ||||||| || |||| ||||| ||||||||||| ||| ||||||| || |
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| T |
41388247 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
41388346 |
T |
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| Q |
275 |
tggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttgagaagacctatga |
350 |
Q |
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| T |
41388347 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatga |
41388422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 1262477 - 1262366
Alignment:
| Q |
69 |
ttatgtaggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatctt |
168 |
Q |
| |
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|||||||||| |||| || |||||||| |||||||| || ||||| || || || ||||| || ||||| ||||| |||||||| ||||| ||||||||| |
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| T |
1262477 |
ttatgtaggtattgtgcttgattctggtgatggtgtgagtcacacagtgcccatatacgaagggtatgctcttccccatgcaattcttcggttggatctt |
1262378 |
T |
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| Q |
169 |
gcaggtcgtgat |
180 |
Q |
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|| || |||||| |
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| T |
1262377 |
gctgggcgtgat |
1262366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 43647481 - 43647313
Alignment:
| Q |
86 |
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac |
185 |
Q |
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|||||||||| || ||||| || ||||| || || || || ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| || |
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| T |
43647481 |
tggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctggtcgtgatctaac |
43647382 |
T |
|
| Q |
186 |
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt |
254 |
Q |
| |
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|||| | ||||||||||| | || ||| | || |||| |||||||| ||||| ||||| |||||||| |
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| T |
43647381 |
tgattctttgatgaagatcctcactgagagagggtacatgttcaccacctcagccgagcgggaaattgt |
43647313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 13660373 - 13660340
Alignment:
| Q |
7 |
cctgggtgccccaccatcctccatgcaacagcta |
40 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13660373 |
cctgggtgccccaccatcctccatgcaacagcta |
13660340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 293
Target Start/End: Complemental strand, 59614 - 59407
Alignment:
| Q |
86 |
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac |
185 |
Q |
| |
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|||||||||| |||||||| |||||||| || ||||| |||||||| ||||| || ||||| || ||||||||| | ||| | || |||||||| || || |
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| T |
59614 |
tggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgac |
59515 |
T |
|
| Q |
186 |
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaattggcttatatt |
285 |
Q |
| |
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|||| ||||||| ||| | || || ||||| || |||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||| ||| |
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| T |
59514 |
tgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacatt |
59415 |
T |
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| Q |
286 |
gctcttga |
293 |
Q |
| |
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|| ||||| |
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| T |
59414 |
gcccttga |
59407 |
T |
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