View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0227_low_11 (Length: 355)
Name: NF0227_low_11
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0227_low_11
[» ] scaffold0015 (1 HSPs)
Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 38 - 350
Target Start/End: Complemental strand, 37050843 - 37050531
Alignment:
Q
38
ctaggcatgagttgatgtgattttctgtgttttatgtaggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgc
137
Q
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37050843
ctaggcatgagttgatgtgattttctgtgttttatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgc
37050744
T
Q
138
acttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttca
237
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37050743
acttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttca
37050644
T
Q
238
gcagagcgagaaattgtaagggatatgaaggagaaattggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttg
337
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
T
37050643
gcagagcgagaaattgtaagggatatgaaggagaaattggcttatattgctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttg
37050544
T
Q
338
agaagacctatga
350
Q
|||||||||||||
T
37050543
agaagacctatga
37050531
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 8689579 - 8689747
Alignment:
Q
86
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac
185
Q
|||||||||| |||||||| |||||||| || || || |||||||| ||||| ||||||||||| ||||||||| | ||||| || |||||||| || ||
T
8689579
tggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggtcgtgaccttac
8689678
T
Q
186
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt
254
Q
||| |||||||||||||| || || ||||| || |||| ||||| ||||||||||||||||||||
T
8689679
cgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgt
8689747
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0015 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 350
Target Start/End: Original strand, 68182 - 68458
Alignment:
Q
74
taggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcagg
173
Q
||||| ||||||| |||||||| |||||||| |||||||| |||||||| || || |||||||| |||||||| |||||||| |||||||||||||||||
T
68182
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg
68281
T
Q
174
tcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaa
273
Q
|||||||||||| || || | ||||| || |||||||||||||| ||| |||||||||| |||| ||||| ||||| || || || ||||||| |||
T
68282
tcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaa
68381
T
Q
274
ttggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttgagaagacctatga
350
Q
| | || |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||||||||| ||||||
T
68382
ctatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaagagctatga
68458
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 350
Target Start/End: Original strand, 41388147 - 41388422
Alignment:
Q
75
aggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggt
174
Q
|||| |||||||||| ||||| |||||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||||||| | ||| | |||||
T
41388147
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg
41388246
T
Q
175
cgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaat
274
Q
||||| ||||||||||| |||||||| || | ||||||||||| || ||||||| || |||| ||||| ||||||||||| ||| ||||||| ||
T
41388247
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc
41388346
T
Q
275
tggcttatattgctcttgattacgaacaggagttggaaactgctaagactagctcagctgttgagaagacctatga
350
Q
|| |||||||||| ||||||| || || ||| | |||||| | || || || || ||||||||||||| ||||||
T
41388347
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatga
41388422
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 1262477 - 1262366
Alignment:
Q
69
ttatgtaggtcttgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatctt
168
Q
|||||||||| |||| || |||||||| |||||||| || ||||| || || || ||||| || ||||| ||||| |||||||| ||||| |||||||||
T
1262477
ttatgtaggtattgtgcttgattctggtgatggtgtgagtcacacagtgcccatatacgaagggtatgctcttccccatgcaattcttcggttggatctt
1262378
T
Q
169
gcaggtcgtgat
180
Q
|| || ||||||
T
1262377
gctgggcgtgat
1262366
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 43647481 - 43647313
Alignment:
Q
86
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac
185
Q
|||||||||| || ||||| || ||||| || || || || ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
T
43647481
tggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctggtcgtgatctaac
43647382
T
Q
186
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt
254
Q
|||| | ||||||||||| | || ||| | || |||| |||||||| ||||| ||||| ||||||||
T
43647381
tgattctttgatgaagatcctcactgagagagggtacatgttcaccacctcagccgagcgggaaattgt
43647313
T
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HSP Overview ] [
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Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 13660373 - 13660340
Alignment:
Q
7
cctgggtgccccaccatcctccatgcaacagcta
40
Q
||||||||||||||||||||||||||||||||||
T
13660373
cctgggtgccccaccatcctccatgcaacagcta
13660340
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 293
Target Start/End: Complemental strand, 59614 - 59407
Alignment:
Q
86
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac
185
Q
|||||||||| |||||||| |||||||| || ||||| |||||||| ||||| || ||||| || ||||||||| | ||| | || |||||||| || ||
T
59614
tggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgac
59515
T
Q
186
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaattggcttatatt
285
Q
|||| ||||||| ||| | || || ||||| || |||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||| |||
T
59514
tgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacatt
59415
T
Q
286
gctcttga
293
Q
|| |||||
T
59414
gcccttga
59407
T
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Alignment Overview ]
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