View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_13 (Length: 323)
Name: NF0227_low_13
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_13 |
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| [»] scaffold0096 (2 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 44627 - 44427
Alignment:
| Q |
42 |
ggctttaagtag-aaaaaatgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggaggaaaatgact |
140 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
44627 |
ggctttaagtagcaaaaaacgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggagggaaattact |
44528 |
T |
|
| Q |
141 |
tcatattcaaggttaaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatcagactttctttgatttttaagtaagtaaga |
240 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44527 |
tcatattcaaggttaaatttgtcattttagggtgttagggctgcattagggttagggatttagggaaatcagactttctttga-ttttaagtaagtaaga |
44429 |
T |
|
| Q |
241 |
tt |
242 |
Q |
| |
|
|| |
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|
| T |
44428 |
tt |
44427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 33898 - 33718
Alignment:
| Q |
44 |
ctttaagtag-aaaaaatgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggaggaaaatgacttc |
142 |
Q |
| |
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|||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
33898 |
ctttaagtaggaaaaaacgcgcataattaaattggtgaagacaatgttaaatagtagttagttgctcattaatgtgatgatttaggagggaaataacttc |
33799 |
T |
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| Q |
143 |
atattcaaggttaaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatcagactttctttga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33798 |
atattcaaggttaaatttgtcattttaaggtgttagggctccattagggttagggatttagggaaatcagactttctttga |
33718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 38862264 - 38862464
Alignment:
| Q |
42 |
ggctttaagtag-aaaaaatgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggaggaaaatgact |
140 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
38862264 |
ggctttaagtagcaaaaaacgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggagggaaatcact |
38862363 |
T |
|
| Q |
141 |
tcatattcaaggttaaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatcagactttctttgatttttaagtaagtaaga |
240 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38862364 |
tcatattcaaggttaaatttgtcattttagggtgttagggctgcattaggattagggatttagggaaatcagactttctttga-ttttaagtaagtaaga |
38862462 |
T |
|
| Q |
241 |
tt |
242 |
Q |
| |
|
|| |
|
|
| T |
38862463 |
tt |
38862464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 10614027 - 10613928
Alignment:
| Q |
127 |
ggaggaaaatgacttcatattcaaggttaaatttgtcattttaaggtgttagggctgcat-tagggttagggatttagggaaatcagactttctttgatt |
225 |
Q |
| |
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||||| ||||||||| ||||||| || |||| |||||||||| ||||||||||||||| | ||||||||||||| | | |||||||| ||||||||| |
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| T |
10614027 |
ggagggaaatgacttgatattcagggataaacttgtcattttg-ggtgttagggctgcaacttgggttagggatttggagtaatcagaccatctttgatt |
10613929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 31145394 - 31145209
Alignment:
| Q |
54 |
aaaaaatgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggaggaaaatgacttcatattcaaggt |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31145394 |
aaaaaacgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcat-aatgtgatgatttaggagggaaatgacttcatattcaaggt |
31145296 |
T |
|
| Q |
154 |
taaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatcagactttctttgatttttaagtaagtaagat |
241 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
31145295 |
taaatttgtcattttagggtgttagggctgcattagggttagggatttagggaaatcatactttctttga-ttttaagtaagtaagat |
31145209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 28322736 - 28322907
Alignment:
| Q |
44 |
ctttaagtag-aaaaaatgtgcataattaaattggtgaagacaatgttaagtagtagttagttgctcattaatgtgatgatttaggaggaaaatgacttc |
142 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28322736 |
ctttaagtagcaaaaaacgtgcataattaaattggtgaagacaatgttaagtagtaattagttgctcattaatgtgatgatttaggaggaaaatgatttc |
28322835 |
T |
|
| Q |
143 |
atattcaaggttaaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatcagac |
214 |
Q |
| |
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||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28322836 |
atattgaaggttaaatttatcattttaggatgttagggctgcattagggttagggatttagggaaatcagac |
28322907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 22151721 - 22151619
Alignment:
| Q |
112 |
taatgtgatgatttaggaggaaaatgacttcatattcaaggttaaatttgtcattttaaggtgttagggctgcattagggttagggatttagggaaatca |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
22151721 |
taatgtgatgatttaggagggaaatgacttcttattcaaggttaaatttgtcattttagtgtgttagggcttcattagggttaggaatttagggaaatca |
22151622 |
T |
|
| Q |
212 |
gac |
214 |
Q |
| |
|
||| |
|
|
| T |
22151621 |
gac |
22151619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 13660373 - 13660334
Alignment:
| Q |
7 |
cctgggtgccccaccatcctccatgcaacagctagggctt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13660373 |
cctgggtgccccaccatcctccatgcaacagctaaggctt |
13660334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 34575697 - 34575765
Alignment:
| Q |
133 |
aaatgacttcatattcaaggttaaatttgtcattttaaggtgttagggctgca-ttagggttagggattt |
201 |
Q |
| |
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|||| |||| || |||| || ||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
34575697 |
aaataacttgatgttcagggataaatttgtcattttgag-tgttagggctgcaattagggttagggattt |
34575765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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