View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_16 (Length: 268)
Name: NF0227_low_16
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 7542653 - 7542420
Alignment:
| Q |
29 |
acggaatgtcctaattgaacttgaagagggataagaggagagccaacaaggtaaagcaaaaatcgaagttcatttaaacgtgctgaaaccgtaggggaag |
128 |
Q |
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| T |
7542653 |
acggaatgtcctaattgaacttgaagagggataagaggagagccaacaaggtaaagcaaaaatcgaagttcatttaaacgtgctgaaaccgtaggggaag |
7542554 |
T |
|
| Q |
129 |
acaatttatcctcagtttgagccttcatccatgttaacatattttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtatagg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7542553 |
acaatttatcctcagtttgagccttcatccatgttaacatattttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttcaggtatagg |
7542454 |
T |
|
| Q |
229 |
tatttcaagaacagtttccaatccatcttctttg |
262 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7542453 |
tatttcaagaacagtttccaatccatcttctttg |
7542420 |
T |
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