View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_18 (Length: 254)
Name: NF0227_low_18
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3741022 - 3741265
Alignment:
| Q |
1 |
tttattgttattgtcgcaaataaaacactaacacacactgtttctttctctgcacaaaacatgaccaaacacaaaaacctttatcttcttcttctctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3741022 |
tttattgttattgtcgcaaataaaacactaacacacactgtttctttctctgcacaaaacatgaccaaacacaaaaacctttatcttcttcttctctcaa |
3741121 |
T |
|
| Q |
101 |
caacaattttcttccttctcttcgactcaatctcagccattgatttcattttcaacggcttcaactcttcaaacgtgcttctctttggcaatgccaccat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3741122 |
caacaattttcttccttctcttcaactcaatctcagccattgatttcattttcaacggcttcaactcttcaaacgtgcttctctttggcaatgccaccat |
3741221 |
T |
|
| Q |
201 |
tgattctcaaattctaacactcacacatcaacaatctttctctg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3741222 |
tgattctcaaattctaacactcacacatcaacaatctttctctg |
3741265 |
T |
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