View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_19 (Length: 252)
Name: NF0227_low_19
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 32091309 - 32091069
Alignment:
| Q |
1 |
aagagtaataatgggctaattgtgctggggaaatggaagaaattgttaaa-gatttttagggtcggaatattttagctccaccttcatcaaagagttttg |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32091309 |
aagagtaataatgggctgattgtgctggggaaatggaagaaattgttaaaagatttttagggtcggaatgttttagctccaccttcatcaaagagttttg |
32091210 |
T |
|
| Q |
100 |
ggatgtaatgaaatggaaggtaaaatatatgtttgatcactttcatgtgaat--gtgtctttccaatagtannnnnnngtttcctacttcattactttga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
32091209 |
ggatgtaatgaaatggaaggtaaaatatatgtttgatcgctttcatgtgaatgtgtgtctttccaatagtattttt---tttcctacttcattactttga |
32091113 |
T |
|
| Q |
198 |
ttttaaaggtgcattcccccaatatcatggagtcatcgtttcat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32091112 |
ttttaaaggtgcattcccccaatatcatggagtcatcgtttcat |
32091069 |
T |
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