View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0227_low_5 (Length: 446)
Name: NF0227_low_5
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 68 - 442
Target Start/End: Original strand, 6485895 - 6486269
Alignment:
| Q |
68 |
tttgtctggagaaaggcttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaatc |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485895 |
tttgtctggagaaagacttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaatt |
6485994 |
T |
|
| Q |
168 |
gagcttttgaagatgtctttgagtgttggtaatgttccggcacgtttgtgaacgctagggttcttgagagaaactttccaaacacggattttaccgtctt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6485995 |
gagcttttgaagatgtctttgagtgttggtaatgttccagcacgtttgtgaacgctagggttcttgagagagactttccaaacacggattttaccgtctt |
6486094 |
T |
|
| Q |
268 |
ggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486095 |
ggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacg |
6486194 |
T |
|
| Q |
368 |
aatgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcg |
442 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6486195 |
aatgttcttgctgtctgagccggtgtataataagtcaccggatgcggctaaagaataaatgtgaccctcttcgcg |
6486269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 13660373 - 13660334
Alignment:
| Q |
30 |
cctgggtgccccaccatcctccatgcaacagctagggctt |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13660373 |
cctgggtgccccaccatcctccatgcaacagctaaggctt |
13660334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 443
Target Start/End: Original strand, 25703316 - 25703390
Alignment:
| Q |
369 |
atgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcga |
443 |
Q |
| |
|
||||| ||||| || | |||||||||||| | |||||||||| ||||||| || || |||||||| ||||||||| |
|
|
| T |
25703316 |
atgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcga |
25703390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 6917655 - 6917703
Alignment:
| Q |
352 |
gattcttccacacacgaatgttcttgctgtctgaaccggtgtataataa |
400 |
Q |
| |
|
|||||||||| ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
6917655 |
gattcttccaaacacgaatgtttttactatcagaaccggtgtataataa |
6917703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1440 times since January 2019
Visitors: 2391