View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0227_low_7 (Length: 397)
Name: NF0227_low_7
Description: NF0227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0227_low_7 |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 3429373 - 3429740
Alignment:
| Q |
1 |
ttgaatggtacaatggtgtttcatgtt-acaaattaaatgcataattgtcacatgagtaacatgaaacaccgttgcaccattcaacttatgtaacatgaa |
99 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3429373 |
ttgaatggtacaatggtgtttcatgtttacaaattaaatgcataattgacacatgagtaacatgaaacaccgtcgcaccattcaacttatgtaacatgaa |
3429472 |
T |
|
| Q |
100 |
actccattacaccataagcaggaagtctaacacttcttccaaatttacaaattaaatgcataatttggatacactgtcattcagagatgcaactaaagca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429473 |
actccattacaccataagcaggaagtctaacacttcttccaaatttacaaattaaatgcataatttggatacactgtcattcagagatgcaactaaagca |
3429572 |
T |
|
| Q |
200 |
agaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcgaatcttttcttgagatctctt |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429573 |
agaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcgaatcttttcttgagatctctt |
3429672 |
T |
|
| Q |
300 |
gtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3429673 |
atgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc |
3429740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 367
Target Start/End: Complemental strand, 3391386 - 3391203
Alignment:
| Q |
180 |
tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga |
279 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| |||||| || ||||| |||||| | ||||| |||||| |||| ||||||||||||| | || ||| |
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| T |
3391386 |
tcagagattcaactgaaacaagaattcagaagatttcttgatgatctatatgatgccggtcttactgaattgggaatatcacatgcatcacacatttcgg |
3391287 |
T |
|
| Q |
280 |
atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc |
367 |
Q |
| |
|
||| || ||||||||||||| ||||||||||||||| ||||||| |||||||| ||| |||||| ||||| ||||||||||||| |
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| T |
3391286 |
atcattccttgagatctcttttgattggaatgggaaattgccac----atagtcatcaatattcttgggaagagcttatcacaggttc |
3391203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 3315209 - 3315355
Alignment:
| Q |
180 |
tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga |
279 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| |||||| || | ||| |||||||| ||||| |||||| ||||||||||||| |||| |||| | | |
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| T |
3315209 |
tcagagattcaactgaaacaagaattcagaagatttcttgatgatatatatgatgcaggtcttactgaatttggaacatcacatggatcacaaattttgg |
3315308 |
T |
|
| Q |
280 |
atcttttcttgagatctcttgtgattggaatgggaagttgccacata |
326 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| ||||||||||||||| |
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|
| T |
3315309 |
atctttccttgagatctcttttgtttggaatcggaagttgccacata |
3315355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 7164437 - 7164327
Alignment:
| Q |
254 |
aacatcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagag |
353 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||||||||| ||| ||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
7164437 |
aacatcacattcatcagaaatctcaaatctttccttgagatcacttttgattggaatgggaagttgtcacataa----tcattgatactcgtggcaagag |
7164342 |
T |
|
| Q |
354 |
tttatcacaggttct |
368 |
Q |
| |
|
|||| |||||||| |
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|
| T |
7164341 |
catatcccaggttct |
7164327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 3364509 - 3364665
Alignment:
| Q |
169 |
tacactgtcattcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatc |
268 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||||||||| |||| |||||| || ||||| |||||||| ||||| |||| | ||||||||||||||| |
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|
| T |
3364509 |
tacaatgtgattcagagattcaactgaagcaagaattcggaagatttcttgatgatctatatgatgcaggtcttactgaaatgagaacatcacatgcatt |
3364608 |
T |
|
| Q |
269 |
agaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacat |
325 |
Q |
| |
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| |||| ||||||||| | ||||||| ||| || |||| || |||||||||||||| |
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|
| T |
3364609 |
acaaatttcgaatcttaccatgagatcccttttgtttggtatcggaagttgccacat |
3364665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 367
Target Start/End: Complemental strand, 3286294 - 3286185
Alignment:
| Q |
254 |
aacatcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagag |
353 |
Q |
| |
|
|||||||||||||||| |||| || |||| || |||||||| ||| ||||||||||||||| || |||||||| ||||||| ||||| ||||||| |
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|
| T |
3286294 |
aacatcacatgcatcacaaatctcaaatccttctttgagatcacttttgattggaatgggaaatttccacatat----tcattgaggctcttagcaagag |
3286199 |
T |
|
| Q |
354 |
tttatcacaggttc |
367 |
Q |
| |
|
|||||||||||| |
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|
| T |
3286198 |
catatcacaggttc |
3286185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 367
Target Start/End: Complemental strand, 6905680 - 6905497
Alignment:
| Q |
180 |
tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga |
279 |
Q |
| |
|
|||| ||| ||||||| ||| |||||| ||| |||||| |||||||| || |||| |||||| ||||| | |||||||||||||||| |||| ||| |
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|
| T |
6905680 |
tcagtgattcaactaattcaaaaattaacaagttttcttgatggtctatatggtgcaaatcttactgaatcggaaacatcacatgcatcaaaaatctcgg |
6905581 |
T |
|
| Q |
280 |
atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc |
367 |
Q |
| |
|
|| ||| ||||| ||||||| ||||| |||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| |
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|
| T |
6905580 |
atatttccttgaaatctcttttgattacaatgggaagttgccac----atagtcgtcgatactcttggcaagagcttatcacaggttc |
6905497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 32410867 - 32410763
Alignment:
| Q |
258 |
tcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagttta |
357 |
Q |
| |
|
|||||||||||| || | || |||| || ||||| || ||| ||||| |||||||||||||||||||| || |||||||||||||||||||| || |
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| T |
32410867 |
tcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacata----gttattgatactcttggcaagagcata |
32410772 |
T |
|
| Q |
358 |
tcacaggtt |
366 |
Q |
| |
|
||||||||| |
|
|
| T |
32410771 |
tcacaggtt |
32410763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 366
Target Start/End: Original strand, 15803262 - 15803444
Alignment:
| Q |
180 |
tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga |
279 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| |||||| | ||||| |||||||| ||||| |||| | ||||||||||| |||| | |||| ||| |
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|
| T |
15803262 |
tcagagattcaactgaaacaagaattcagaagatttcttgataatctatatgatgcaggtcttactgaagtgggaacatcacaggcattacaaatttcgg |
15803361 |
T |
|
| Q |
280 |
atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggtt |
366 |
Q |
| |
|
|||||||| ||||||| ||| || |||| || |||||||| ||||| ||||| |||||||||||||||| ||||||| |||| |
|
|
| T |
15803362 |
atcttttcatgagatcccttttgtttggtatcggaagttgtcacatt----gtcatcaatactcttggcaagagcttatcacgggtt |
15803444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 20839079 - 20839162
Alignment:
| Q |
279 |
aatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggtt |
366 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| || | ||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
20839079 |
aatcttttcttgaaatcacttgtgattggaatgggaagttccc----aaatagtcacagatactcttggcaagagcttagcacaggtt |
20839162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 367
Target Start/End: Original strand, 20812724 - 20812808
Alignment:
| Q |
279 |
aatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc |
367 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||| || | ||||||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
20812724 |
aatctttccttgaaattacttgtgattggaatgggaagttccc----aaatagtcacagatactcttggcaagagcttagcacaggttc |
20812808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 5937 - 5874
Alignment:
| Q |
263 |
tgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacata |
326 |
Q |
| |
|
||||||| |||| ||| |||||| ||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5937 |
tgcatcacaaatctcggatctttccttgaaatctcttttgattacaatgggaagttgccacata |
5874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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