View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0228_low_1 (Length: 304)
Name: NF0228_low_1
Description: NF0228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0228_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 33 - 296
Target Start/End: Original strand, 47408024 - 47408286
Alignment:
| Q |
33 |
gaattgaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgt |
132 |
Q |
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| T |
47408024 |
gaattgaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgt |
47408123 |
T |
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| Q |
133 |
tgaaatctatattcaatcgccttnnnnnnnnncatctgtaaggctacataaaccacatactctacctacctgttgttgcacttctgttaatgctttccta |
232 |
Q |
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| T |
47408124 |
tgaaatctatattcaatcgccttaaaaaaaa-catctgtaaggctgcataaaccacatactctacctacctgttgctgcacttctgttaatgctttccta |
47408222 |
T |
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| Q |
233 |
atcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
296 |
Q |
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| T |
47408223 |
atcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
47408286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 47421734 - 47421987
Alignment:
| Q |
38 |
gaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgttgaaa |
137 |
Q |
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| T |
47421734 |
gaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttt----tgtaagaaaaaggatggttcttagcataacgttgaaa |
47421829 |
T |
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| Q |
138 |
tctatattcaatcgccttnnnnnnnnncatctgtaaggctacataaaccacatactctacctacctgttgttgcacttctgttaatgctttcctaatcat |
237 |
Q |
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| T |
47421830 |
tctatctttaaccaccttaagaaaacacat-tgtaagataaagtaaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcat |
47421928 |
T |
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| Q |
238 |
ctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
296 |
Q |
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| T |
47421929 |
cggatcccccacaatccctttcataagccgtacaaaatgttctttcggtatttcatctc |
47421987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 47390915 - 47391019
Alignment:
| Q |
38 |
gaagtaacagttggcatgcttatagggtgctgttgtccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgttgaaa |
137 |
Q |
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| T |
47390915 |
gaagtaacagttggcatccttacagggggctgctgtccagaagaacctgtattggtttttgtctgcaataaaaaggatggttcttagcataacgttgaaa |
47391014 |
T |
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| Q |
138 |
tctat |
142 |
Q |
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||||| |
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| T |
47391015 |
tctat |
47391019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 47391053 - 47391152
Alignment:
| Q |
197 |
cctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttcatctc |
296 |
Q |
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||||||||||||||||||| |||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||| | ||||||||||| |
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| T |
47391053 |
cctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctc |
47391152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 47419412 - 47419515
Alignment:
| Q |
193 |
tctacctacctgttgttgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
292 |
Q |
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||||||||||||||||||||||| || ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||||| |||||| |
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| T |
47419412 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttca |
47419511 |
T |
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| Q |
293 |
tctc |
296 |
Q |
| |
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|||| |
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| T |
47419512 |
tctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 47419314 - 47419382
Alignment:
| Q |
74 |
ccagaagaacccgtattggattttatctgcaagaaaaacaatggttcttagcataacgttgaaatctat |
142 |
Q |
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| T |
47419314 |
ccagaagaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctat |
47419382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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