View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0228_low_5 (Length: 247)
Name: NF0228_low_5
Description: NF0228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0228_low_5 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 21843691 - 21843890
Alignment:
| Q |
1 |
gttttgattatttgggtcttcattgagtttatgtagtgacnnnnnnnngttgatttctgataggnnnnnnn-gtttctaataatgggtatttgnnnnnnn |
99 |
Q |
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| T |
21843691 |
gttttgattatttgggtcttcattgagtttatgtagtgacttttttt-gttgatttctgatagggtttttttgtttctaataatgggtatttgaaaaaaa |
21843789 |
T |
|
| Q |
100 |
nnttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctcgatgatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21843790 |
a-ttaacctttttatgttgctaaatccttggttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgt |
21843888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 20161 - 19961
Alignment:
| Q |
1 |
gttttgattatttgggtcttcattgagtttatgtagtgacnnnnnnnngttgatttctgataggnnnnnnn-gtttctaataatgggtatttgnnnnnnn |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
20161 |
gttttgattatttgggtcttcattgagtttatgtagtgacttttttt-gttgatttttgatagggtttttttgtttctaataatgggtatttgaaaaaaa |
20063 |
T |
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| Q |
100 |
nnttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctcgatgatgt |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
20062 |
a-ttaaccttgttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgatgt |
19964 |
T |
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| Q |
200 |
cca |
202 |
Q |
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||| |
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| T |
19963 |
cca |
19961 |
T |
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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 10660573 - 10660660
Alignment:
| Q |
102 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
189 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10660573 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10660660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 10874718 - 10874805
Alignment:
| Q |
102 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
189 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10874718 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10874805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10660151 - 10660190
Alignment:
| Q |
1 |
gttttgattatttgggtcttcattgagtttatgtagtgac |
40 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| |
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| T |
10660151 |
gttttgattatttgggtctacattgagtttatgtactgac |
10660190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10874296 - 10874335
Alignment:
| Q |
1 |
gttttgattatttgggtcttcattgagtttatgtagtgac |
40 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| |
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| T |
10874296 |
gttttgattatttgggtctacattgagtttatgtactgac |
10874335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12818544 - 12818505
Alignment:
| Q |
1 |
gttttgattatttgggtcttcattgagtttatgtagtgac |
40 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
12818544 |
gttttgattgtttgggtcttcattgagtttatgtagtgac |
12818505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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