View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0230-INSERTION-3 (Length: 782)
Name: NF0230-INSERTION-3
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0230-INSERTION-3 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 738; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 9 - 782
Target Start/End: Complemental strand, 36283883 - 36283110
Alignment:
| Q |
9 |
ttacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaagagatttgatatattttgttttacttctttattttcatgatc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283883 |
ttacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaggagatttgatatattttgttttacttctttattttcatgatc |
36283784 |
T |
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| Q |
109 |
aaaatagataccaatacgcgcttctttcaatttgttcaaattctcaaccgcataactactcgccttagtttcttctagtacaaggtactcaagaagagga |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36283783 |
aaaatagataccaatacgtgcttctttcaatttgttcaaattctcaacctcataattactcgccttagtttcttcaagtacaaggtactcaagaagagga |
36283684 |
T |
|
| Q |
209 |
gtgttaatatgaattttttcatcaaaactcctaacatgtaacctcttcaatgtaggcacacatattccaaacaaagagctacatttaaactcgacatcct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283683 |
gtgttaatatgaattttttcatcaaaactcctaacatgtaacctcttcaatgtaggcacacatattccaaacaaagagctacatttaaactcgacatcct |
36283584 |
T |
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| Q |
309 |
cgtagtaaagttcctcaagaacaggacagccatagaaaagcttaataagagctttatcttcaacaatgcacgaaatacataaatgcaaaatcttcaacaa |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36283583 |
cgtagtaaagttcctcaagaacaggacagccatagaaaagcttcataagagctttatcttcaacaatgcacgaaatacataaatgcaaaatcttcagcaa |
36283484 |
T |
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| Q |
409 |
aggaagatgaagatgagaaggaagattcaggtaaaatctcccaaccaacttcaaaacaacgagtgtttcgcaagcgaaaacctcacaaggcaaataaact |
508 |
Q |
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| T |
36283483 |
aggaagatgaagatgagaaggaaggttcaggtaaaatctcccaaccaacttcaaaacaacgagtgtttcgcaagcgaaaatctcacaaggcaaataaact |
36283384 |
T |
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| Q |
509 |
tttaaactatataaagaaagatctatctcctcaactttttgtttacttgccatgcaaactattgaactaaccaagtgtgggatataacagttattgtgga |
608 |
Q |
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| T |
36283383 |
tttaaactatataaagaaagatctatctcctcaactttttgtttacttgccatgcaaactattgaactaaccaagtgtgggatataacagttattgtgga |
36283284 |
T |
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| Q |
609 |
tagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagttatttcttgttggacaattttctgggaa |
708 |
Q |
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| T |
36283283 |
tagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagttatttcttgttggacaattttctgggaa |
36283184 |
T |
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| Q |
709 |
atgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttg |
782 |
Q |
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| T |
36283183 |
atgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttg |
36283110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 681
Target Start/End: Complemental strand, 34554624 - 34553944
Alignment:
| Q |
10 |
tacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaagagatttgatatattttgttttacttctttattttcatgatca |
109 |
Q |
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||||||||||| || || ||||||||||||||| ||||||||| ||| |||||||| | ||||| |||||||| |||||||| ||||||||||| |||| |
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| T |
34554624 |
tacctctgtggtatacaaatctaagcaaagaaatctggttttacgaaccccattgaaaatatttgctatattttcttttacttttttattttcataatca |
34554525 |
T |
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| Q |
110 |
aaatagataccaatacgcgcttctttcaatttgttcaaattctcaaccgcataactactcgccttagtttcttctagtacaaggtactcaagaagaggag |
209 |
Q |
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| T |
34554524 |
aaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacatagttaatcgccttagtttctttcatcacaaggcactcaagaagaggag |
34554425 |
T |
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| Q |
210 |
tgttaatatgaattttttcatcaaaactcctaacatgtaacctcttcaatgtaggcacacatattccaaacaaagagctacatttaaactcgacatcctc |
309 |
Q |
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| |||||||||| | |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||| ||| |||| || ||||| |
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| T |
34554424 |
ttttaatatgaagtctttcatcaaaactcctaacaaataacctcttcaacgaaggcacacatattccaaacaaagaagtacgtttgaacttcacttcctc |
34554325 |
T |
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| Q |
310 |
gtagtaaagttcctcaagaacaggacagccatagaaaagcttaataagag---------ctttatcttcaacaatgcacgaaatacataaatgcaaaatc |
400 |
Q |
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|||| |||||| |||||| ||||||| | | | |||| | | ||||||| | | ||| ||||||| |||| ||| | | |||||||||| |
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| T |
34554324 |
gtagaaaagttgttcaagagcaggacaactagataaaaacctcataagagcatcatcatcgtgatcatcaacaaagcacaaaagattgagatgcaaaatc |
34554225 |
T |
|
| Q |
401 |
ttcaacaaaggaagatgaagatgagaaggaagattcaggtaaaatctcccaaccaacttcaaaacaacgagtgtttcgcaagcgaaaacctcacaaggca |
500 |
Q |
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||||||||||||||||||||||||||||||| ||| || | |||| ||||||||||| |||||||| |||||||| ||| | ||| || ||||| |
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| T |
34554224 |
ttcaacaaaggaagatgaagatgagaaggaacattgagatgaaatgtcccaaccaacctcaaaacagtgagtgttttgcatgtataaagctggtgaggca |
34554125 |
T |
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| Q |
501 |
aataaacttttaaactatataaagaaagatctatctcctcaactttttgtttacttgccatgcaaactattgaactaaccaagtgtgggatataacagtt |
600 |
Q |
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||||||||||||||| ||||||||| || |||||||| | ||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
34554124 |
aataaacttttaaacgatataaagagaggtctatctcgtaaactttttgagtagttgccatggaaactattgaactaaccaagtgagggatataacagtt |
34554025 |
T |
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| Q |
601 |
attgtggatagagaatgaaactcttttcatacaacttggttttctttgagctaagacacttttcacaatttgaacaaagtt |
681 |
Q |
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||| |||||||||| |||| |||||| || || ||| || ||||||| || |||||| |||| ||| | ||||||||| |
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| T |
34554024 |
gttgaggatagagaaggaaagtcttttgatgcattttgattccctttgagataggacactgttcataatatcaacaaagtt |
34553944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 731 - 782
Target Start/End: Complemental strand, 29914750 - 29914699
Alignment:
| Q |
731 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttg |
782 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
29914750 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttg |
29914699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 731 - 782
Target Start/End: Complemental strand, 29963903 - 29963852
Alignment:
| Q |
731 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttg |
782 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
29963903 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttg |
29963852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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