View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0230-INSERTION-5 (Length: 728)

Name: NF0230-INSERTION-5
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0230-INSERTION-5
NF0230-INSERTION-5
[»] chr4 (13 HSPs)
chr4 (202-725)||(42454418-42454939)
chr4 (202-661)||(41635418-41635872)
chr4 (7-202)||(42454175-42454372)
chr4 (343-429)||(18553058-18553144)
chr4 (340-458)||(24476066-24476184)
chr4 (347-430)||(24332765-24332847)
chr4 (342-458)||(6244149-6244264)
chr4 (340-429)||(14540324-14540413)
chr4 (339-410)||(5628087-5628157)
chr4 (344-383)||(21823393-21823432)
chr4 (579-638)||(18553289-18553350)
chr4 (364-409)||(21823444-21823489)
chr4 (579-653)||(21823654-21823726)
[»] chr8 (11 HSPs)
chr8 (202-656)||(33053495-33053953)
chr8 (7-202)||(33053250-33053449)
chr8 (350-427)||(13109635-13109712)
chr8 (576-636)||(13109867-13109928)
chr8 (342-429)||(19467486-19467573)
chr8 (342-429)||(19565167-19565254)
chr8 (570-636)||(18672537-18672604)
chr8 (340-458)||(28862691-28862809)
chr8 (340-457)||(18847193-18847309)
chr8 (391-444)||(25094883-25094936)
chr8 (581-638)||(13110206-13110266)
[»] chr5 (8 HSPs)
chr5 (202-652)||(24114368-24114821)
chr5 (7-202)||(24114867-24115064)
chr5 (372-514)||(21166337-21166488)
chr5 (340-613)||(16809342-16809622)
chr5 (340-458)||(10235814-10235931)
chr5 (384-458)||(21171023-21171094)
chr5 (582-651)||(24663550-24663620)
chr5 (372-409)||(26344200-26344237)
[»] scaffold0608 (1 HSPs)
scaffold0608 (344-613)||(5849-6122)
[»] chr6 (6 HSPs)
chr6 (340-458)||(3634199-3634317)
chr6 (350-458)||(16434125-16434233)
chr6 (573-635)||(6470224-6470286)
chr6 (340-430)||(22259469-22259559)
chr6 (356-409)||(6470456-6470509)
chr6 (340-429)||(6038729-6038819)
[»] chr1 (7 HSPs)
chr1 (344-613)||(11110412-11110685)
chr1 (340-649)||(4521624-4521938)
chr1 (340-410)||(24115482-24115552)
chr1 (340-451)||(28623184-28623296)
chr1 (581-615)||(36571779-36571813)
chr1 (344-409)||(9382078-9382143)
chr1 (340-405)||(42577094-42577159)
[»] scaffold0346 (1 HSPs)
scaffold0346 (348-458)||(12351-12461)
[»] chr3 (5 HSPs)
chr3 (340-458)||(1085484-1085595)
chr3 (393-458)||(15987391-15987456)
chr3 (340-409)||(17132460-17132529)
chr3 (340-409)||(39583984-39584053)
chr3 (466-529)||(17132598-17132661)
[»] chr2 (9 HSPs)
chr2 (340-427)||(31000153-31000235)
chr2 (348-421)||(21625152-21625225)
chr2 (340-430)||(25473213-25473302)
chr2 (340-428)||(35406085-35406173)
chr2 (340-458)||(17162223-17162340)
chr2 (338-458)||(20515769-20515888)
chr2 (340-421)||(31483239-31483320)
chr2 (573-653)||(31607845-31607922)
chr2 (577-654)||(13370376-13370451)
[»] chr7 (7 HSPs)
chr7 (340-457)||(25621325-25621441)
chr7 (340-409)||(4587680-4587749)
chr7 (373-430)||(16663233-16663290)
chr7 (373-430)||(17637593-17637650)
chr7 (359-431)||(22976936-22977008)
chr7 (383-458)||(14629000-14629075)
chr7 (340-382)||(240521-240563)
[»] scaffold0454 (1 HSPs)
scaffold0454 (359-431)||(12844-12916)
[»] scaffold0148 (1 HSPs)
scaffold0148 (393-438)||(22820-22866)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 202 - 725
Target Start/End: Original strand, 42454418 - 42454939
Alignment:
Q  202 agagacattgcagatccttccaatataactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcaaaaaacaatgag 301  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42454418 agagacattgcaaatccttccaatataactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcaaaaaacaatgag 42454517  T
Q  302 gtagaagttagacctcgactcctaatatttcgatttgatgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42454518 gtagaagttagacctcgactcctaatatttcgatttgatgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaa 42454617  T
Q  402 ctagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcatgggtttgtttacgaacaagatgaagaaaactattctacgatga 501  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  42454618 ctagaaattttatggcatagtgtgcaatgagtttccaaaaaatatatgaatgttcatggatttgcttatgaacaagatgaagaaaactattctacgatga 42454717  T
Q  502 agataattgtcttttgacataaatcaataatatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaagataaa 601  Q
    ||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42454718 agataattgtcttttgacataaatcaataatatctttgaagattaaaaaaactaaaatacatagaattttaaaaggcaaagaaacttaaagaaagataaa 42454817  T
Q  602 ttgcattgcattaagtaaagatggttcagcaaatcatggttacatacattcttcactcgtgtactttgagtttaatttatagaacttttg-taatgaa-t 699  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||| ||||||| |    
T  42454818 ttgcattgcattaagtaaagatggttcaacaaatcattgttacatacattcttcactcgtgtactttgag-----tttatagaacttttgttaatgaatt 42454912  T
Q  700 gtgacccattttttc-atgaaaaaata 725  Q
    ||||||||||||||| |||||||||||    
T  42454913 gtgacccattttttctatgaaaaaata 42454939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 202 - 661
Target Start/End: Complemental strand, 41635872 - 41635418
Alignment:
Q  202 agagacattgcagatccttccaatataactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcaaaaaacaatgag 301  Q
    |||||||  ||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41635872 agagacaccgcagatccttccagtaaaactagcattatcaattagcaccatactttctaatggttcaaagagacattctaattcttcagcaaacaatgag 41635773  T
Q  302 gtagaagttagacctcgactcctaatatttcgatttga-----tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcagga 396  Q
    ||||||||||| |||||||||||||||||| |||||||     ||||||||||||||| ||| |||| |||||| |||||||||||||||||||| | ||    
T  41635772 gtagaagttaggcctcgactcctaatatttggatttgaactattgtttaccggtgtttttggaaaaccataagactagttttaaattgttacttgaaaga 41635673  T
Q  397 tcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcatgggtttgtttacgaacaagatgaagaaaactattctac 496  Q
    || |||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| |||||||  |||  |||||||||||||||||||||||||| ||     
T  41635672 tcgaactagaaatcctagggcatgttgtgcaatgattttctagaaaatgtatgaatgttcatgaattttcttacgaacaagatgaagaaaactattttat 41635573  T
Q  497 gatgaagataattgtcttttgacataaatcaataatatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaag 596  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||         |||||| || | |||||||| |||| |||| |||||||||||||    
T  41635572 gatgaagataattgtccttttacagaaatcaataatatgtttgaaga---------ctaaaagacttggaattttataaggaaaag-aacttaaagaaag 41635483  T
Q  597 ataaattgcattgcattaagtaaagatggttcagcaaatcatggttacatacattcttcactcgt 661  Q
    |||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  41635482 ataaattgtattgcattaagtaaagatggttcaacaaatcactgttacatacattcttcactcgt 41635418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 42454175 - 42454372
Alignment:
Q  7 agcttatttaattgttttcagaatgattc---ttcaggttgtacaactagatccaaaaccattgacacaactacctcaaagaggtcttcaattatgagat 103  Q
    |||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42454175 agcttatttaattgttttcagaatgattcatcttcaggttatacaactagatccaaaaccattgacacaactacctcaaagaggtcttcaattataagat 42454274  T
Q  104 atcaagtggacgattgattggactaagactgaacttgacgct---gagatcgttgttcatcaacatggtaaaggaaattgggaagcaatattaacatatc 200  Q
    |||||||||||    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42454275 atcaagtggac----gattggactaagactgaacttgacgctctggagatcgttgttcatcaacatggtaaaggaaattgggaagcaatattaacatatc 42454370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 343 - 429
Target Start/End: Original strand, 18553058 - 18553144
Alignment:
Q  343 ttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaat 429  Q
    ||||| |||||| | ||||||||||||| |||||||||| |||||||||  |||||||||||||||| |||| | ||||||||||||    
T  18553058 ttacctgtgttttttgtaaacaataagactagttttaaaatgttacttgtgggatcaaactagaaatcctatagaatgttgtgcaat 18553144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 24476066 - 24476184
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||||  |||||| ||||||||||||| |||||||||| | |||| ||||||||||||||||| ||||   | |||||||||||||||   ||||||     
T  24476066 tgtttacgtgtgtttttggtaaacaataaaattagttttacaatgttgcttgcaggatcaaactaaaaatcgcaaggcatgttgtgcaatctttttccag 24476165  T
Q  440 aaaatatatgaacgttcat 458  Q
    ||||| | |||| ||||||    
T  24476166 aaaatgtttgaatgttcat 24476184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 24332847 - 24332765
Alignment:
Q  347 cggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg 430  Q
    |||||||| |||||||||| ||  |||||||||||  ||||||||||  ||||||||||||||| |||| ||||||||||||||    
T  24332847 cggtgtttttggtaaacaagaatgttagttttaaaa-gttacttgcataatcaaactagaaattttatgacatgttgtgcaatg 24332765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 458
Target Start/End: Complemental strand, 6244264 - 6244149
Alignment:
Q  342 tttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaa 441  Q
    |||| |||||||| ||||||||||||| | || ||||||||| |||   ||| ||||||||||||||| ||||| |||||||||||||   |||||| ||    
T  6244264 tttaacggtgtttttggtaaacaataaaactacttttaaatt-ttaggcgcatgatcaaactagaaatcctatgccatgttgtgcaatctttttccagaa 6244166  T
Q  442 aatatatgaacgttcat 458  Q
    ||| | |||| ||||||    
T  6244165 aatgtttgaatgttcat 6244149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 14540324 - 14540413
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaat 429  Q
    |||||||  |||||| |||||||||| |||  |||||||||| || ||||| ||  |||||||||||| | ||| |||||||||||||||    
T  14540324 tgtttacttgtgtttttggtaaacaacaagtctagttttaaaatgatacttacaaaatcaaactagaattcctaaggcatgttgtgcaat 14540413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 5628157 - 5628087
Alignment:
Q  339 atgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaatt 410  Q
    |||||||||||||||| |||||||||| | | | | ||||||| | |||||||||||||||||||| |||||    
T  5628157 atgtttaccggtgtttttggtaaacaagacgctaa-ttttaaaatattacttgcaggatcaaactaaaaatt 5628087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 21823393 - 21823432
Alignment:
Q  344 taccggtgtttgtggtaaacaataagattagttttaaatt 383  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  21823393 taccggtgtttttggtaaacaataagactagttttaaatt 21823432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 579 - 638
Target Start/End: Original strand, 18553289 - 18553350
Alignment:
Q  579 aaagaaacttaaagaaagataaattgcattgcattaagt--aaagatggttcagcaaatcat 638  Q
    |||||||||||||||||  |||||||||||||||||| |  || |||||||||| |||||||    
T  18553289 aaagaaacttaaagaaaagtaaattgcattgcattaatttaaaggatggttcagaaaatcat 18553350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 21823444 - 21823489
Alignment:
Q  364 aataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    ||||||| |||||||||||  | |||||||||||||||||||||||    
T  21823444 aataagactagttttaaataataacttgcaggatcaaactagaaat 21823489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 653
Target Start/End: Original strand, 21823654 - 21823726
Alignment:
Q  579 aaagaaacttaaagaaagataaattgcattgca-ttaagtaaagatggttcagcaaatcatggttacatacattct 653  Q
    ||||| |||||||||||  |||||||||||||| | |||||||| ||||||| |||||||   |||||||||||||    
T  21823654 aaagacacttaaagaaaagtaaattgcattgcactaaagtaaaggtggttcaacaaatca---ttacatacattct 21823726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 202 - 656
Target Start/End: Original strand, 33053495 - 33053953
Alignment:
Q  202 agagacattgcagatccttccaatataactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcaaaaaacaatgag 301  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  33053495 agagacattgcatatccttcaaatagaactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcagcaaacaatgag 33053594  T
Q  302 gtagaagttagacctcgactcctaatatttcgatttga-----tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcagga 396  Q
    ||||||||||| | ||||||||||||||||||||||||     ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  33053595 gtagaagttaggcatcgactcctaatatttcgatttgaactattgtttaccggtgtttttggtaaacaataagactagttttaaattgttacttgcagga 33053694  T
Q  397 tcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcatgggtttgtttacgaacaagatgaagaaaactattctac 496  Q
    ||||||||||||| ||| |||||||| |||||||| |||| | |||||||||||| |||||||| |||  ||||||||||||||||||||| | || ||     
T  33053695 tcaaactagaaatcctagggcatgttttgcaatgattttctagaaaatatatgaatgttcatggattttcttacgaacaagatgaagaaaattgttttat 33053794  T
Q  497 gatgaagataattgtcttttgacataaatcaataatatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaag 596  Q
    |||||| |||||| |||||||||| |||||||||||||||| |||||||       |||||| |  | ||||||||||||||||||||||||||||||||    
T  33053795 gatgaatataattatcttttgacagaaatcaataatatgttcgaagatt-acaagactaaaagagttagaattttaaaaggcaaagaaacttaaagaaag 33053893  T
Q  597 ataaattgcattgcattaagtaaagatggttcagcaaatcatggttacatacattcttca 656  Q
    ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  33053894 ataaattacattgcattaagtaaagatggttcaacaaatcattgttacatacattcttca 33053953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 33053250 - 33053449
Alignment:
Q  7 agcttatttaattgttttcagaatgattc---ttcaggttgtacaactagatccaaaaccattgacacaactacctcaaagaggtcttc---aattatga 100  Q
    |||| ||||||||||||||||||||||||   |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||    
T  33053250 agctcatttaattgttttcagaatgattcatcttcaggttatacaactatatccaaaaccattgacacaactacctcaaagaggtcttcattaattatga 33053349  T
Q  101 gatatcaagtggacgattgattggactaagactgaacttgacg--ctgagatcgttgttcatcaacatggtaaaggaaattgggaagcaatattaacata 198  Q
    |||| |||||||||     ||||||||| |||| |||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33053350 gataccaagtggac----aattggactaggactaaacttgacgctctgggatcgttgttcagcaacatggtaaaggaaattgggaagcaataataacata 33053445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 13109635 - 13109712
Alignment:
Q  350 tgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgca 427  Q
    ||||| ||||||||||||||| |||||||||| ||||||| | ||||||||||| ||||| |||||  ||||||||||    
T  13109635 tgtttttggtaaacaataagactagttttaaaatgttactcgtaggatcaaactggaaatcctatgagatgttgtgca 13109712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 13109867 - 13109928
Alignment:
Q  576 ggcaaagaaacttaaagaaagataaattgcattgcatt-aagtaaagatggttcagcaaatc 636  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||    
T  13109867 ggcaaagaaacttaaagaaaaataaattgcattgcattgaattaaagatggttcatcaaatc 13109928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 19467486 - 19467573
Alignment:
Q  342 tttaccggtgtttgtggtaaacaataagattagttttaaatt-gttacttgcaggatcaaactagaaattctatggcatgttgtgcaat 429  Q
    ||||||||||||| |||||||||| | | | || |||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||    
T  19467486 tttaccggtgtttttggtaaacaaaacgct-agatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 19467573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 19565167 - 19565254
Alignment:
Q  342 tttaccggtgtttgtggtaaacaataagattagttttaaatt-gttacttgcaggatcaaactagaaattctatggcatgttgtgcaat 429  Q
    ||||||||||||| |||||||||| | | | || |||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||    
T  19565167 tttaccggtgtttttggtaaacaaaacgct-agatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 19565254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 570 - 636
Target Start/End: Complemental strand, 18672604 - 18672537
Alignment:
Q  570 ttaaaaggcaaagaaacttaaagaaagataaattgcattgcatt-aagtaaagatggttcagcaaatc 636  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| || |||||||| |||| ||||||    
T  18672604 ttaaaaggcaaagaaacttaaagaaaaataaattacattgcattgaattaaagatgcttcatcaaatc 18672537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 458
Target Start/End: Complemental strand, 28862809 - 28862691
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||||  |||||| ||||||||||||  | ||||||| || ||||||||||| || |||| ||||||| ||| |||||||||||||||   ||| ||     
T  28862809 tgtttactagtgtttttggtaaacaatataactagttttcaaatgttacttgcatgaccaaattagaaatcctagggcatgttgtgcaatcgtttttcac 28862710  T
Q  440 aaaatatatgaacgttcat 458  Q
    |||||| ||||| ||||||    
T  28862709 aaaatacatgaatgttcat 28862691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 457
Target Start/End: Original strand, 18847193 - 18847309
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    ||||||||||||||| |||  ||||| | || ||||||| | || ||||  | ||||||||||||||||| ||||| |||||||||||||   |||||||    
T  18847193 tgtttaccggtgtttttggcgaacaagaggactagttttga-ttattacaagaaggatcaaactagaaatcctatgacatgttgtgcaatctttttccaa 18847291  T
Q  440 aaaatatatgaacgttca 457  Q
    |||||| ||||| |||||    
T  18847292 aaaatacatgaatgttca 18847309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 25094883 - 25094936
Alignment:
Q  391 gcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaat 444  Q
    |||||||||||| |||||||||| |||||||||||||| |  ||||||||||||    
T  25094883 gcaggatcaaaccagaaattctagggcatgttgtgcaaagtttttccaaaaaat 25094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 638
Target Start/End: Original strand, 13110206 - 13110266
Alignment:
Q  581 agaaacttaaagaaa-gataaattgcattgcatt--aagtaaagatggttcagcaaatcat 638  Q
    ||||||||||||||| ||||||||||||||||||  || ||||| ||||||| ||||||||    
T  13110206 agaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcat 13110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 202 - 652
Target Start/End: Complemental strand, 24114821 - 24114368
Alignment:
Q  202 agagacattgcagatccttccaatataactagcattatcaattagcaccatgctttctaatggtacaaagagacattctaattcttcaaaaaacaatgag 301  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||  ||||||||||    
T  24114821 agagacattgcagatccttcaaatagaactagcattatcaattagcaccaagctttctaatggtttaaagagacattctaattcttcagcaaacaatgag 24114722  T
Q  302 gtagaagttagacctcgactcctaatatttcgatttgat-----gtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcagga 396  Q
    ||||||||||| ||||  ||||||||||||| ||| ||      ||||| |||||||| ||| |||| |||||| |||||||||||||||||||||||||    
T  24114721 gtagaagttaggcctccgctcctaatatttctattagaactacagtttatcggtgtttttggaaaaccataagactagttttaaattgttacttgcagga 24114622  T
Q  397 tcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcatgggtttgtttacgaacaagatgaagaaaactattctac 496  Q
    | |||||| |||| ||| |||||| |||||||||| |||||| ||||| |||||| |||||||| |||| |||||||||||||||||||||||||| ||     
T  24114621 ttaaacta-aaatcctagggcatgatgtgcaatgattttccagaaaatgtatgaatgttcatggatttgcttacgaacaagatgaagaaaactattttat 24114523  T
Q  497 gatgaagataattgtcttttgacataaatcaataatatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaag 596  Q
    ||||||||||||||||||||||   |||||||||||||||| |||||||       |||||| |||| |||||||||| |||||||||||| |||||||     
T  24114522 gatgaagataattgtcttttgatggaaatcaataatatgttggaagatt-aaaagactaaaagacatagaattttaaatggcaaagaaactaaaagaaaa 24114424  T
Q  597 ataaattgcattgcattaagtaaagatggttcagcaaatcatggttacatacattc 652  Q
    ||||||||||||||||||| ||||||||||||| |||||||   ||||||||||||    
T  24114423 ataaattgcattgcattaaataaagatggttcaacaaatcactattacatacattc 24114368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 24115064 - 24114867
Alignment:
Q  7 agcttatttaattgttttcagaatgattcttc---aggttgtacaactagatccaaaaccattgacacaactacctcaaagaggtcttcaattatgagat 103  Q
    |||| |||||||| ||||||||||||||| ||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24115064 agctcatttaattattttcagaatgattcatctttaggttatacaactagatccaaaaccattgacacaactacctcaaagaggtcttcaattatgagat 24114965  T
Q  104 atcaagtggacgattgattggactaagactgaacttgacgct---gagatcgttgttcatcaacatggtaaaggaaattgggaagcaatattaacatatc 200  Q
    | ||||||||||    |||||||||||||||||| |||| ||   | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  24114964 accaagtggacg----attggactaagactgaacctgacactctggggatcgtttttcatcaacatggtaaaggaaatagggaaacaatattaacatatc 24114869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 372 - 514
Target Start/End: Complemental strand, 21166488 - 21166337
Alignment:
Q  372 tagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttca---------tgggt 462  Q
    |||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| ||||| |||||| |||||         ||  |    
T  21166488 tagttttaaaatgttacttgtaggatcaaactagaaattctaggacatgttgtgcaatgattttccagaaaatgtatgaatgttcatcatattcttgaat 21166389  T
Q  463 ttgtttacgaacaagatgaagaaaactattctacgatgaagataattgtctt 514  Q
    ||||||| ||||||||||||| ||||| || || | ||||||||||||||||    
T  21166388 ttgtttatgaacaagatgaaggaaactgttttatggtgaagataattgtctt 21166337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 613
Target Start/End: Original strand, 16809342 - 16809622
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||||| |||| | ||||||| || |||| |||||||||| ||||| |||||||||||||||||||||| || | |||||||   ||||| |||||||    
T  16809342 tgtttacccgtgtgtttggtaaataagaagactagttttaaaatgttatttgcaggatcaaactagaaattttaagacatgttgcataatga-tttccaa 16809440  T
Q  440 -aaaatatatgaac---------gttcatgggtttgtttacgaacaagatg-aagaaaactattctacgatgaagataattgtcttttgacataaatcaa 528  Q
     ||||| |||||||          ||||||  |||| ||| |||||| ||| || |||| | || || ||||||||||||||||||| ||||| ||||||    
T  16809441 gaaaatgtatgaacattcatcatattcatgaatttgcttatgaacaaaatgaaaaaaaattgttttatgatgaagataattgtctttcgacatgaatcaa 16809540  T
Q  529 taatatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaagataaattgcattgcatt 613  Q
     ||| ||||||||||||        ||||| || || || ||  ||||||||| |||||||||||||||||||||| ||||||||    
T  16809541 caatgtgtttgaagattaaaaat--taaaagac-ttaaaattctaaaggcaaaaaaacttaaagaaagataaattgtattgcatt 16809622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 10235814 - 10235931
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||||  |||||| ||||||||||||||| ||||||| | || ||||  ||| |||||||| |||||||||| | |||||||||||||   |||||||    
T  10235814 tgtttactagtgtttttggtaaacaataagactagttttga-ttattacaagcatgatcaaaccagaaattctaggacatgttgtgcaatctttttccaa 10235912  T
Q  440 aaaatatatgaacgttcat 458  Q
    |||||| ||||| ||||||    
T  10235913 aaaatacatgaatgttcat 10235931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 21171094 - 21171023
Alignment:
Q  384 gttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcat 458  Q
    |||||||||||||||||||||||||||||| | ||   |||||||||| |||||| ||||| |||||| ||||||    
T  21171094 gttacttgcaggatcaaactagaaattctaggaca---tgtgcaatgattttccagaaaatgtatgaatgttcat 21171023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 651
Target Start/End: Original strand, 24663550 - 24663620
Alignment:
Q  582 gaaacttaaagaaaga-taaattgcattgcattaa-gtaaagatggttcagcaaatcatggttacatacatt 651  Q
    |||||||||||||| | |||||||||||||||||| |||||| ||||||| ||||||| | |||||||||||    
T  24663550 gaaacttaaagaaaaagtaaattgcattgcattaatgtaaaggtggttcaacaaatca-gattacatacatt 24663620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 26344200 - 26344237
Alignment:
Q  372 tagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  26344200 tagttttaaaatgttacttgcaggatcaaacgagaaat 26344237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 344 - 613
Target Start/End: Original strand, 5849 - 6122
Alignment:
Q  344 taccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaa 443  Q
    ||||||||||| |||||||||| |||| ||||||||   ||||| ||| |||||||||||| |||| ||||| || ||||||||||   |||||| ||||    
T  5849 taccggtgtttttggtaaacaacaagactagttttaggatgttatttgtaggatcaaactaaaaatcctatgacacgttgtgcaatctttttccagaaaa 5948  T
Q  444 tatatg-----aacgttcatgggtttgtttacgaacaagatgaagaaaactattctacg-atgaagataattgtcttttgacataaatcaataatatgtt 537  Q
    ||||||      |  |||||||| ||||||| ||||| |||||||||||||||| || | |||||||||| ||| |||  ||||||||||||| ||||||    
T  5949 tatatgttcatcatattcatgggcttgtttatgaacaggatgaagaaaactattttaagaatgaagataactgtttttcaacataaatcaatagtatgtt 6048  T
Q  538 tgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaagataaattgcattgcatt 613  Q
    | ||||||        ||||| || | ||||||||||| |||||| |||||||||||| |  ||||||||||||||    
T  6049 taaagattaaagtgt-taaaagacttggaattttaaaa-gcaaaggaacttaaagaaacagtaattgcattgcatt 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 3634199 - 3634317
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    ||||||||||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||| ||| | ||| | ||||||||||||||| ||| ||     
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaataattacttgcaggatcaaactggaagtcctaggacatgttgtgcaatgatttttcag 3634298  T
Q  440 aaaatatatgaacgttcat 458  Q
    ||||| ||||||| |||||    
T  3634299 aaaatgtatgaacattcat 3634317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 16434125 - 16434233
Alignment:
Q  350 tgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatg 449  Q
    ||||| || |||||||||||| |||||||||| |||| |||||||||| |||||||||||  ||||  |||||||||||| | ||| |||||||||||||    
T  16434125 tgtttttgataaacaataagactagttttaaaatgttgcttgcaggattaaactagaaatcatatgatatgttgtgcaatcattttacaaaaaatatatg 16434224  T
Q  450 aacgttcat 458  Q
    || ||||||    
T  16434225 aatgttcat 16434233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 6470286 - 6470224
Alignment:
Q  573 aaaggcaaagaaacttaaagaaagataaattgcattgcattaagtaaagatggttcagcaaat 635  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6470286 aaagacaaagaaacttaaagaaagataaattgcattgcatcaagtaaagatggttcatcaaat 6470224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 22259559 - 22259469
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg 430  Q
    ||||||||| ||||| | ||||||||||||| |||||||||||  || |||||||||| ||||||||||| ||||  ||||||||||||||    
T  22259559 tgtttaccgctgttttttgtaaacaataagactagttttaaataattgcttgcaggatgaaactagaaatcctataacatgttgtgcaatg 22259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 6470509 - 6470456
Alignment:
Q  356 tggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  6470509 tggtaaacaataagactagttttaaattgttacttgcaggatcaagctataaat 6470456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 6038729 - 6038819
Alignment:
Q  340 tgtttaccggtgtttgtggtaaa-caataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaat 429  Q
    ||||| || |||||| ||||||| ||||| || |||||||||||  ||||||||||||||||||||||||| ||| || || |||||||||    
T  6038729 tgtttgcctgtgtttttggtaaaacaatatgactagttttaaataattacttgcaggatcaaactagaaatcctagggaatattgtgcaat 6038819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 344 - 613
Target Start/End: Original strand, 11110412 - 11110685
Alignment:
Q  344 taccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaa 443  Q
    ||||||||||| |||||||||| |||| ||||||||   ||||| ||| |||||||||||| |||| ||||| || ||||||||||   |||||| ||||    
T  11110412 taccggtgtttttggtaaacaacaagactagttttaggatgttatttgtaggatcaaactaaaaatcctatgacacgttgtgcaatctttttccagaaaa 11110511  T
Q  444 tatatg-----aacgttcatgggtttgtttacgaacaagatgaagaaaactattctacg-atgaagataattgtcttttgacataaatcaataatatgtt 537  Q
    ||||||      |  |||||||| ||||||| ||||| |||||||||||||||| || | |||||||||| ||| |||  ||||||||||||| ||||||    
T  11110512 tatatgttcatcatattcatgggcttgtttatgaacaggatgaagaaaactattttaagaatgaagataactgtttttcaacataaatcaatagtatgtt 11110611  T
Q  538 tgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaacttaaagaaagataaattgcattgcatt 613  Q
    | ||||||        ||||| || | ||||||||||| |||||| |||||||||||| |  ||||||||||||||    
T  11110612 taaagattaaagtgt-taaaagacttggaattttaaaa-gcaaaggaacttaaagaaacagtaattgcattgcatt 11110685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 340 - 649
Target Start/End: Complemental strand, 4521938 - 4521624
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||| ||||| || |||||||||||||||||||||||||| ||||||||| |  ||||||||||||||  |  | |||||||||||||   |||| |     
T  4521938 tgtttatcggtgattttggtaaacaataagattagttttaaaatgttacttggaaaatcaaactagaaatcattggacatgttgtgcaatttttttctat 4521839  T
Q  440 aaaatatatgaacg---------ttcatgggtttgtttacgaacaagatgaagaaaactattctacgatgaagataattgtcttttgacataaatcaata 530  Q
    |||||||||||| |         |||||| ||||||||| |||||||||||| |||||| || |  |||||||||||  |||||| ||||| |||||| |    
T  4521838 aaaatatatgaaagttcatcatattcatgagtttgtttatgaacaagatgaataaaactgttttgtgatgaagataaccgtctttcgacatgaatcaaca 4521739  T
Q  531 atatgtttgaagattnnnnnnnctaaaatacattgaattttaaaaggcaaagaaactt-aaagaaagataaattgcattgcattaagtaaagatggttca 629  Q
    || || |||| ||||       |||||| || | ||||||| |||||||||||||||| |||||||| ||||||| ||||| | ||||||  || |||||    
T  4521738 atgtgcttgaggatt-aaaagactaaaagacttcgaatttt-aaaggcaaagaaacttaaaagaaag-taaattgtattgcttgaagtaa--attgttca 4521644  T
Q  630 gcaaatcatggttacataca 649  Q
     ||||||||| || ||||||    
T  4521643 acaaatcatgattgcataca 4521624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 24115552 - 24115482
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaatt 410  Q
    |||||| |||||||| ||||||||||||| | |||||||||| |||| |||| ||||| | ||||||||||    
T  24115552 tgtttatcggtgtttttggtaaacaataaaactagttttaaaatgttgcttgtaggataatactagaaatt 24115482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 451
Target Start/End: Original strand, 28623184 - 28623296
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg-agtttcca 438  Q
    ||||||||||||||| |||||||||| ||   || ||||||  ||||||||| | |||||||||| |||| |||   ||||||||||||||   ||||||    
T  28623184 tgtttaccggtgtttttggtaaacaaaaatgctaattttaacatgttacttgaaagatcaaactaaaaatcctaaaacatgttgtgcaatgttttttcca 28623283  T
Q  439 aaaaatatatgaa 451  Q
    |||||||| ||||    
T  28623284 aaaaatatttgaa 28623296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 615
Target Start/End: Complemental strand, 36571813 - 36571779
Alignment:
Q  581 agaaacttaaagaaagataaattgcattgcattaa 615  Q
    |||||||||||||||||| ||||||||||||||||    
T  36571813 agaaacttaaagaaagattaattgcattgcattaa 36571779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 9382078 - 9382143
Alignment:
Q  344 taccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    |||| |||||| ||||| |||||| || |||||||| ||||||  |||||||||||| ||||||||    
T  9382078 taccagtgtttttggtatacaataggactagttttatattgttttttgcaggatcaagctagaaat 9382143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 42577159 - 42577094
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaa--ttgttacttgcaggatcaaactag 405  Q
    ||||||| ||||||| ||||||||||| |  |||||||||||  |||||||||||| |||||||||||    
T  42577159 tgtttacaggtgtttttggtaaacaatca--ttagttttaaaatttgttacttgcatgatcaaactag 42577094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 348 - 458
Target Start/End: Complemental strand, 12461 - 12351
Alignment:
Q  348 ggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatata 447  Q
    ||||||| || |||||||||||| || ||||||||| ||||||| ||||||||| || |||||||| | ||||||||||||||| |||||| ||||||||    
T  12461 ggtgtttttgataaacaataagactaattttaaattattacttgtaggatcaaaatataaattctaggacatgttgtgcaatgattttccagaaaatata 12362  T
Q  448 tgaacgttcat 458  Q
    | ||| |||||    
T  12361 ttaacattcat 12351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 1085484 - 1085595
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    ||||||||||||||| ||||||||||||| | || ||||||||||       |||||||||||||||||| ||| | ||||||||||||||| |||| |     
T  1085484 tgtttaccggtgtttttggtaaacaataaaactaattttaaattg-------caggatcaaactagaaatcctaggacatgttgtgcaatgattttctag 1085576  T
Q  440 aaaatatatgaacgttcat 458  Q
    |||||||||||| ||||||    
T  1085577 aaaatatatgaatgttcat 1085595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 15987391 - 15987456
Alignment:
Q  393 aggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcat 458  Q
    ||||||||||||||||||||| | |||||||||||||   |||||| |||||||||||| ||||||    
T  15987391 aggatcaaactagaaattctaggacatgttgtgcaatctttttccataaaatatatgaatgttcat 15987456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 17132460 - 17132529
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    |||||||  |||||| ||||||||||||||| |||||||||| |||| |||| |||||||||||| ||||    
T  17132460 tgtttacttgtgtttttggtaaacaataagactagttttaaaatgttgcttgtaggatcaaactataaat 17132529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 39584053 - 39583984
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    |||||| | |||||| |||||||||| |   ||||||||||| ||||||||||| |||||||||||||||    
T  39584053 tgtttatcagtgtttttggtaaacaaaagtgttagttttaaaatgttacttgcatgatcaaactagaaat 39583984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 17132598 - 17132661
Alignment:
Q  466 tttacgaacaagatgaagaaaactattctacgatgaagataattgtcttttgacataaatcaat 529  Q
    |||| |||||||||||| ||||||||| |   |||||||||| ||||||| |||||||||||||    
T  17132598 tttatgaacaagatgaataaaactatttttgtatgaagataactgtctttcgacataaatcaat 17132661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 340 - 427
Target Start/End: Complemental strand, 31000235 - 31000153
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgca 427  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||||     |||||||||||||| ||| |||||||||||||    
T  31000235 tgtttacctgtgtttttggtaaacaataagattagttttaaaatgttactt-----atcaaactagaaatcctagggcatgttgtgca 31000153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 21625152 - 21625225
Alignment:
Q  348 ggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgt 421  Q
    ||||||| | ||||||||||||| |||||||||| ||||||||| | ||||||||||||||||||| |||||||    
T  21625152 ggtgtttttagtaaacaataagactagttttaaaatgttacttgtatgatcaaactagaaattctagggcatgt 21625225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 25473213 - 25473302
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg 430  Q
    |||| |||||||||| |||||||||| |  | |||||||||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||    
T  25473213 tgttaaccggtgtttttggtaaacaagac-actagttttaaaatgttacttgcatgatcaaactagaaatcctaggacatgttgtgcaatg 25473302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 35406173 - 35406085
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaa 428  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||  ||| |||||||||||| | |||||||  || | ||||||||||||    
T  35406173 tgtttaccggtttttttggtaaacaataagactagttttaaaacgttgcttgcaggatcagaatagaaatcgtaggacatgttgtgcaa 35406085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 458
Target Start/End: Complemental strand, 17162340 - 17162223
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    |||||||| |||||| ||||||||||||  ||| ||||| | || ||||  |||||||||||| |||||| ||||| |||||||||||||   ||||||     
T  17162340 tgtttaccagtgtttttggtaaacaatagaattggttttga-ttattacaagcaggatcaaaccagaaatcctatgacatgttgtgcaatctttttccat 17162242  T
Q  440 aaaatatatgaacgttcat 458  Q
    |||||| ||||| ||||||    
T  17162241 aaaatacatgaatgttcat 17162223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 20515888 - 20515769
Alignment:
Q  338 gatgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttcc 437  Q
    ||||||||||||||||| ||||||||||||||| |||||||  ||| ||||  |||||||||||| ||||||  || | ||||||||| |||   |||||    
T  20515888 gatgtttaccggtgtttttggtaaacaataagactagtttt-gattattacaagcaggatcaaaccagaaatcttaggacatgttgtgtaatctttttcc 20515790  T
Q  438 aaaaaatatatgaacgttcat 458  Q
    | ||| | |||||| ||||||    
T  20515789 agaaagtgtatgaatgttcat 20515769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 31483239 - 31483320
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgt 421  Q
    ||||| ||||| ||| |||||||||| |||| ||||||| ||  ||| |||||| ||||||||||||||| ||||| |||||    
T  31483239 tgtttgccggtatttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaactagaaatcctatgacatgt 31483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 653
Target Start/End: Complemental strand, 31607922 - 31607845
Alignment:
Q  573 aaaggcaaagaaacttaaagaaagataaattgcattgcattaagtaaagatggttcagcaaatcatggttacatacattct 653  Q
    |||| |||||||  |||||||||  |||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||    
T  31607922 aaagacaaagaagtttaaagaaaactaaattgcattgcattaa-taaagat-gttcatcaaatcat-gttacatacattct 31607845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 654
Target Start/End: Original strand, 13370376 - 13370451
Alignment:
Q  577 gcaaagaaacttaaagaaagataaattgcattgcattaagtaaagatggttcagcaaatcatggttacatacattctt 654  Q
    |||||||||||||||||||  ||||||| |||| ||| | |||| |||||||| |||||||| |||||||||| ||||    
T  13370376 gcaaagaaacttaaagaaaagtaaattggattgtattgaataaa-atggttcaccaaatcat-gttacatacactctt 13370451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 457
Target Start/End: Complemental strand, 25621441 - 25621325
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaa 439  Q
    ||||||||||||||| |||||||||| |||||||| |||  ||| ||||  | |||||||||||| ||||||||||  |||||| ||||||  |||| |     
T  25621441 tgtttaccggtgtttttggtaaacaagaagattagcttt-gattattacaaggaggatcaaactataaattctatgatatgttgcgcaatgtttttctag 25621343  T
Q  440 aaaatatatgaacgttca 457  Q
    ||| |||||||| |||||    
T  25621342 aaagtatatgaatgttca 25621325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 4587680 - 4587749
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat 409  Q
    ||||||||||||||| |||||||||||| || ||||||| ||  ||| |||||| ||| |||||||||||    
T  4587680 tgtttaccggtgtttttggtaaacaatatgactagtttttaaacgttgcttgcaagattaaactagaaat 4587749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 16663290 - 16663233
Alignment:
Q  373 agttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg 430  Q
    ||||||||| |||||||||||| |||||| ||||||||||| | ||||| ||||||||    
T  16663290 agttttaaaatgttacttgcagaatcaaaatagaaattctaggacatgtcgtgcaatg 16663233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 17637650 - 17637593
Alignment:
Q  373 agttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatg 430  Q
    ||||||||| |||||||||||| |||||| ||||||||||| | ||||| ||||||||    
T  17637650 agttttaaaatgttacttgcagaatcaaaatagaaattctaggacatgtcgtgcaatg 17637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 22977008 - 22976936
Alignment:
Q  359 taaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatga 431  Q
    |||| ||||||||||||||| |||  |||||||||||||||||||| |||| ||||  ||| || ||||||||    
T  22977008 taaataataagattagttttgaataattacttgcaggatcaaactaaaaatcctataacatattttgcaatga 22976936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 458
Target Start/End: Complemental strand, 14629075 - 14629000
Alignment:
Q  383 tgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatgagtttccaaaaaatatatgaacgttcat 458  Q
    ||||||||||||||| ||||||||||||||| | ||| |||||||| |  |||||  ||||| |||||| ||||||    
T  14629075 tgttacttgcaggattaaactagaaattctaggacatattgtgcaaggtttttcctcaaaatgtatgaatgttcat 14629000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 240563 - 240521
Alignment:
Q  340 tgtttaccggtgtttgtggtaaacaataagattagttttaaat 382  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||    
T  240563 tgtttaccggtatttttggtaaacaataagactagttttaaat 240521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 12844 - 12916
Alignment:
Q  359 taaacaataagattagttttaaattgttacttgcaggatcaaactagaaattctatggcatgttgtgcaatga 431  Q
    |||| ||||||||||||||| |||  |||||||||||||||||||| |||| ||||  ||| || ||||||||    
T  12844 taaataataagattagttttgaataattacttgcaggatcaaactaaaaatcctataacatattttgcaatga 12916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 22820 - 22866
Alignment:
Q  393 aggatcaaactagaaattctatg-gcatgttgtgcaatgagtttcca 438  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||    
T  22820 aggatcaaactagaaattctaggagcatgttgtgcaatgattttcca 22866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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