View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0230_high_3 (Length: 220)
Name: NF0230_high_3
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0230_high_3
Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45113224 - 45113298
Alignment:
Q
1
atgaatcttgacaattatcttagaccaataaatgattttcttcctgatgtcaaagtgaaagtgttggagaataat
75
Q
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
T
45113224
atgaatcttgacaattatcttagaccaataaataattttcttcctgatgtcaaagtgaaagtgttggagaataat
45113298
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 45124507 - 45124578
Alignment:
Q
1
atgaatcttgacaattatcttagaccaataaatgattttcttcctgatgtcaaagtgaaagtgttggagaataat
75
Q
|||||||||||||||| | ||||||||| |||| || ||||| ||||||||||||||||||| ||||||||||
T
45124507
atgaatcttgacaattgttttagaccaa---atgaattgcttccagatgtcaaagtgaaagtgtcggagaataat
45124578
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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