View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0230_low_1 (Length: 459)
Name: NF0230_low_1
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0230_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 201 - 447
Target Start/End: Complemental strand, 7344341 - 7344097
Alignment:
| Q |
201 |
acagcttgctttgttttagagagagaaaattgaatatcaactatgaaaaccacatttcataaccaagttgttggaaccactcaagagtgttgttgcctag |
300 |
Q |
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| T |
7344341 |
acagcttgctctgttttagagagagaaaattgaatatcaactatgaaaaccacatttcataaccaagttgttggaaccactcaagagtgttgttgcctag |
7344242 |
T |
|
| Q |
301 |
ggtactttggagcaattttaaatcatnnnnnnnnnnnnnnnntgatgtttccttcgtaacaaaaacacaacccctataaaacatgcagctcaattctcca |
400 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
7344241 |
ggtactttggagcaattttaaatcat--aaaaaaaaaaaaaatgatgtttccttcgtaacaaaaacacaacccctatagaacatgtagctcaattttcca |
7344144 |
T |
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| Q |
401 |
taagaataactagtcctaacaaaagtctccattcattctcttgttca |
447 |
Q |
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| T |
7344143 |
taagaataactagtcctaacaaaagtctccattcattctcttgttca |
7344097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 205 - 447
Target Start/End: Original strand, 17742578 - 17742829
Alignment:
| Q |
205 |
cttgctttgttttagagagagaaaattgaatatcaactatgaaaaccacatttcataaccaagttgttggaaccactcaagagtgttgttgcctagggta |
304 |
Q |
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| T |
17742578 |
cttgctctgttttagagagagaaaattgaatatcaactatgaaaaccacattttataatcaagttgttggtactactgaagagtgttgttgactagagta |
17742677 |
T |
|
| Q |
305 |
ctttggagcaattttaaatcatnnnnnnnnnnnnnnnntgatgtttccttcgtaacaaaaacacaacccctataaaacatgcagc--------------- |
389 |
Q |
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| T |
17742678 |
ctttggagcaattttaaatcat-------aaaaaaaaatgttgtttccttcgtaacaaaaacacaacccctatagaacatgcagctcgatttctctctac |
17742770 |
T |
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| Q |
390 |
-tcaattctccataagaataactagtcctaacaaaagtctccattcattctcttgttca |
447 |
Q |
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| T |
17742771 |
atcaattttccataagaataactagtcccaacaaaagtctccattcattctcttgttca |
17742829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 7344472 - 7344396
Alignment:
| Q |
70 |
cacctttaaacccccacacaaaatgcaacgagtgccaatgtgggacccacacacaaacacattcaactttttgatca |
146 |
Q |
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| T |
7344472 |
cacctttaaacccccacacaaaatgcaacatgtgccaatgtgggacccacacacaaacacattcaactttttgatca |
7344396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 17742442 - 17742515
Alignment:
| Q |
70 |
cacctttaaacccccacacaaaat-gcaacgagtgccaatgtgggacccacacacaaacacattcaactttttg |
142 |
Q |
| |
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| T |
17742442 |
cacctttaaactcccacacaaaattgcaacatgtggcaatgtgggacccacacacaaacacattcagctttttg |
17742515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 36623330 - 36623388
Alignment:
| Q |
75 |
ttaaacccccacacaaaa-tgcaacgagtgccaatgtgggacccacacacaaacacatt |
132 |
Q |
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| T |
36623330 |
ttaaacacccacacaaaaatgcaacaagtggcaacgtgggacccacacacaaacacatt |
36623388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 43961230 - 43961172
Alignment:
| Q |
75 |
ttaaacccccacacaaaa-tgcaacgagtgccaatgtgggacccacacacaaacacatt |
132 |
Q |
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|||||| ||||||||||| |||||| | || ||| |||||||||||||||||||||||| |
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| T |
43961230 |
ttaaacacccacacaaaaatgcaacaaatggcaacgtgggacccacacacaaacacatt |
43961172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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