View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0230_low_11 (Length: 205)

Name: NF0230_low_11
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0230_low_11
NF0230_low_11
[»] chr3 (1 HSPs)
chr3 (11-177)||(1182024-1182193)
[»] chr7 (5 HSPs)
chr7 (11-152)||(8035221-8035366)
chr7 (11-152)||(38111126-38111271)
chr7 (11-152)||(45034130-45034275)
chr7 (11-152)||(46045417-46045562)
chr7 (11-151)||(19303982-19304126)
[»] chr5 (2 HSPs)
chr5 (11-152)||(32385998-32386143)
chr5 (11-152)||(14024445-14024590)
[»] chr8 (3 HSPs)
chr8 (11-152)||(41999794-41999939)
chr8 (11-152)||(45092951-45093096)
chr8 (11-152)||(9215733-9215878)
[»] chr4 (3 HSPs)
chr4 (11-152)||(28945820-28945965)
chr4 (11-152)||(1368944-1369089)
chr4 (44-152)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (11-152)||(11996187-11996332)
chr2 (11-151)||(24126868-24127012)
chr2 (11-152)||(42865427-42865572)
[»] chr1 (1 HSPs)
chr1 (11-152)||(6293526-6293671)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 1182024 - 1182193
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatctattttgaaatatgatttcaatgaccaa 110  Q
    ||||||| ||| ||||| | |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1182024 agataatcctgctacttagtatatgactttcatgacaacatgctagtatttatggaattggtgaaacaaatctattttgaaatatgatttcaaagaccaa 1182123  T
Q  111 gcaat---tcactggtaattcaaaagtttactagagagatagaagtcctcatcaaaaggaaactatatac 177  Q
    |||||    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  1182124 gcaatccaacactggtaattcaaaagtttactagatacatagaagtcctcatcaaaaggaaactatatac 1182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 8035221 - 8035366
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||||||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  8035221 agataattctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 8035320  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  8035321 agcaatccaacactggtaattcaaaagtttactagagagatagaag 8035366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 38111271 - 38111126
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  38111271 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 38111172  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  38111171 agcaatccaacactggtgattcaaaagtttactagagagatagaag 38111126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 45034275 - 45034130
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || |||||||||| |||||| | |||||||||||||||| ||||||| |||| |||||||||| |||||||| |||||    
T  45034275 agataatcctgctacttggcagactactttcatgataacatgttggtatttgtggaattggcgaaacaattctatttttgaaataggatttcaaagacca 45034176  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  45034175 agcaatccaacactggtaattcaaaagtttactagagagatagaag 45034130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 46045417 - 46045562
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  46045417 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 46045516  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  46045517 agcaatccaacactggtgattcaaaagtttactagagagatagaag 46045562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 19304126 - 19303982
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||||||  |||||| || ||  |||||| |||||| | ||  ||||||||||||||| | |||||||||| |||||||||| |||||||| ||||     
T  19304126 agataattctactacttgacagacttctttcacgacaacgtactgatatttgtggaattggcggaacaaatctatttttgaaataggatttcaaagaccg 19304027  T
Q  110 agcaattca---ctggtaattcaaaagtttactagagagatagaa 151  Q
    | |||| ||   || |||||||||||||||||  |||| ||||||    
T  19304026 aacaatccaacgctagtaattcaaaagtttacctgagacatagaa 19303982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 32385998 - 32386143
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  32385998 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 32386097  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  32386098 agcaatccaacactggtaattcaaaagtttactagagagatagaag 32386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 14024445 - 14024590
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  14024445 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 14024544  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  14024545 agcaatccaacactggtgattcaaaagtttactagagagatagaag 14024590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 41999794 - 41999939
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  41999794 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 41999893  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||| ||||||||||||||||||||||||||||||    
T  41999894 agcaatccaacactgttaattcaaaagtttactagagagatagaag 41999939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 45092951 - 45093096
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || | ||||| ||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  45092951 agataatcctgctacttggcagactaatttcacgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 45093050  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    |||| |||||||||||||||||||||||||||||||    
T  45093051 agcaatccaacactcgtaattcaaaagtttactagagagatagaag 45093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 9215733 - 9215878
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||| | || |||||||||||| |||||| |||||||||||||||| ||||||||| || |||||||||| |||||||| ||| |    
T  9215733 agataatcctgctacttgggagactactttcatgacatcatgctggtatttgtggaattggcgaaacaaatatatttttgaaataggatttcaaagacta 9215832  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||| ||||||||||||||||    
T  9215833 agcaatccaacactggttattcaaaagttgactagagagatagaag 9215878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 28945965 - 28945820
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  28945965 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 28945866  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  28945865 agcaatccaacactggtgattcaaaagtttactagagagatagaag 28945820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 1368944 - 1369089
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  1368944 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 1369043  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  1369044 agcaatccaacactggtgattcaaaagtttactagagagatagaag 1369089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 36859372 - 36859260
Alignment:
Q  44 gacaacatgctagtatttgtggaattggtgaaacaaatctatttt-gaaatatgatttcaatgaccaagcaat---tcactggtaattcaaaagtttact 139  Q
    ||||||||| |  |||||||||||||||  ||||||||||||||| |||||| |||||||| |||| ||||||   ||||| ||||||||||||||||||    
T  36859372 gacaacatgttgatatttgtggaattggctaaacaaatctatttttgaaataggatttcaaagaccgagcaatccatcactagtaattcaaaagtttact 36859273  T
Q  140 agagagatagaag 152  Q
    ||||| |||||||    
T  36859272 agagaaatagaag 36859260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 11996332 - 11996187
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||| ||| |||||    
T  11996332 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggattccaaagacca 11996233  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  11996232 agcaatccaacactggtaattcaaaagtttactagagagatagaag 11996187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 24127012 - 24126868
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  24127012 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaatatgatttcaaagacca 24126913  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaa 151  Q
     |||||    |||||||||||||||||||||||||||||||||||    
T  24126912 ggcaatccaacactggtaattcaaaagtttactagagagatagaa 24126868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 42865427 - 42865572
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  42865427 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 42865526  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  42865527 agcaatccaacactggtgattcaaaagtttactagagagatagaag 42865572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 6293526 - 6293671
Alignment:
Q  11 agataattctgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 109  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| || |||||| |||||||||||| |||||||||| |||||||| |||||    
T  6293526 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatgtaattggcgaaacaaatctatttttgaaataggatttcaaagacca 6293625  T
Q  110 agcaat---tcactggtaattcaaaagtttactagagagatagaag 152  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  6293626 agcaatccaacactggtgattcaaaagtttactagagagatagaag 6293671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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