View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0230_low_4 (Length: 311)
Name: NF0230_low_4
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0230_low_4
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 9973651 - 9973838
Alignment:
Q
105
actgagatacagaaagaacaaaaatataaaagatttattagcaatgcttgtgctggcaagttaccatttttggttttggccatacttcttggtgtgcact
204
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
T
9973651
actgagatacagaaagaacaaaaatataaaagatttattagcaatgcttgtgctggcaagttaccatttttggttttggccatacttcttggtgtgctct
9973750
T
Q
205
actcaattatcttatcttgaattcttataatgctcattaacattatcttggtcgttttcactctttccacaatgttgatattcttgga
292
Q
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
9973751
actcaattatcttatcttgaattcttataatactcattaacattatcttggtcgttttcactctttccacaatgttgatattattgga
9973838
T
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