View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0230_low_5 (Length: 278)

Name: NF0230_low_5
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0230_low_5
NF0230_low_5
[»] chr2 (10 HSPs)
chr2 (57-208)||(6915171-6915322)
chr2 (68-124)||(10492777-10492833)
chr2 (67-119)||(28105350-28105402)
chr2 (61-124)||(10463585-10463648)
chr2 (61-108)||(10507349-10507396)
chr2 (73-124)||(10860707-10860758)
chr2 (62-124)||(10474161-10474223)
chr2 (68-124)||(7476566-7476622)
chr2 (73-124)||(10848803-10848854)
chr2 (67-124)||(7478731-7478788)
[»] chr4 (3 HSPs)
chr4 (216-278)||(3762512-3762574)
chr4 (222-278)||(3776599-3776655)
chr4 (222-278)||(3745722-3745778)
[»] chr7 (2 HSPs)
chr7 (57-128)||(15045570-15045641)
chr7 (155-208)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (72-123)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q  57 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  157 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  68 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  67 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 119  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  61 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  61 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 108  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  73 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  62 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  68 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  73 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  67 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 3762512 - 3762574
Alignment:
Q  216 cactgtcaccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatag 278  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatag 3762574  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 3776599 - 3776655
Alignment:
Q  222 caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatag 278  Q
    |||||||||||||||| ||||||||||| ||| ||||  ||||||||||||||||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatag 3776655  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 3745722 - 3745778
Alignment:
Q  222 caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatag 278  Q
    ||||||||| |||||| ||||||||||| |||||||| | ||| |||||||||||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatag 3745778  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  57 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 128  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  155 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 208  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  72 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 123  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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