View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0230_low_6 (Length: 229)

Name: NF0230_low_6
Description: NF0230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0230_low_6
NF0230_low_6
[»] chr3 (1 HSPs)
chr3 (48-214)||(1182024-1182193)
[»] chr7 (5 HSPs)
chr7 (48-189)||(8035221-8035366)
chr7 (48-189)||(38111126-38111271)
chr7 (48-189)||(45034130-45034275)
chr7 (48-189)||(46045417-46045562)
chr7 (94-188)||(19303982-19304080)
[»] chr5 (2 HSPs)
chr5 (48-189)||(32385998-32386143)
chr5 (48-189)||(14024445-14024590)
[»] chr8 (3 HSPs)
chr8 (48-189)||(41999794-41999939)
chr8 (48-189)||(45092951-45093096)
chr8 (48-189)||(9215733-9215878)
[»] chr4 (3 HSPs)
chr4 (48-189)||(28945820-28945965)
chr4 (48-189)||(1368944-1369089)
chr4 (81-189)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (48-189)||(11996187-11996332)
chr2 (48-188)||(24126868-24127012)
chr2 (48-189)||(42865427-42865572)
[»] chr1 (1 HSPs)
chr1 (48-189)||(6293526-6293671)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 1182024 - 1182193
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatctattttgaaatatgatttcaatgaccaa 147  Q
    ||||||| ||| ||||| | |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1182024 agataatcctgctacttagtatatgactttcatgacaacatgctagtatttatggaattggtgaaacaaatctattttgaaatatgatttcaaagaccaa 1182123  T
Q  148 gcaat---tcactggtaattcaaaagtttactagagagatagaagtcctcatcaaaaggaaactatatac 214  Q
    |||||    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  1182124 gcaatccaacactggtaattcaaaagtttactagatacatagaagtcctcatcaaaaggaaactatatac 1182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 8035221 - 8035366
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  8035221 agataattctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 8035320  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  8035321 agcaatccaacactggtaattcaaaagtttactagagagatagaag 8035366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 38111271 - 38111126
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  38111271 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 38111172  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  38111171 agcaatccaacactggtgattcaaaagtttactagagagatagaag 38111126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 45034275 - 45034130
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || |||||||||| |||||| | |||||||||||||||| ||||||| |||| |||||||||| |||||||| |||||    
T  45034275 agataatcctgctacttggcagactactttcatgataacatgttggtatttgtggaattggcgaaacaattctatttttgaaataggatttcaaagacca 45034176  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  45034175 agcaatccaacactggtaattcaaaagtttactagagagatagaag 45034130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 46045417 - 46045562
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  46045417 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 46045516  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  46045517 agcaatccaacactggtgattcaaaagtttactagagagatagaag 46045562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 19304080 - 19303982
Alignment:
Q  94 tatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgaccaagcaattca---ctggtaattcaaaagtttactagagagatagaa 188  Q
    ||||||||||||||| | |||||||||| |||||||||| |||||||| |||| | |||| ||   || |||||||||||||||||  |||| ||||||    
T  19304080 tatttgtggaattggcggaacaaatctatttttgaaataggatttcaaagaccgaacaatccaacgctagtaattcaaaagtttacctgagacatagaa 19303982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 32385998 - 32386143
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  32385998 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 32386097  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  32386098 agcaatccaacactggtaattcaaaagtttactagagagatagaag 32386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 14024445 - 14024590
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  14024445 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 14024544  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  14024545 agcaatccaacactggtgattcaaaagtttactagagagatagaag 14024590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 41999794 - 41999939
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  41999794 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 41999893  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||| ||||||||||||||||||||||||||||||    
T  41999894 agcaatccaacactgttaattcaaaagtttactagagagatagaag 41999939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 45092951 - 45093096
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || | ||||| ||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  45092951 agataatcctgctacttggcagactaatttcacgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 45093050  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    |||| |||||||||||||||||||||||||||||||    
T  45093051 agcaatccaacactcgtaattcaaaagtttactagagagatagaag 45093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 9215733 - 9215878
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||| | || |||||||||||| |||||| |||||||||||||||| ||||||||| || |||||||||| |||||||| ||| |    
T  9215733 agataatcctgctacttgggagactactttcatgacatcatgctggtatttgtggaattggcgaaacaaatatatttttgaaataggatttcaaagacta 9215832  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||| ||||||||||||||||    
T  9215833 agcaatccaacactggttattcaaaagttgactagagagatagaag 9215878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 28945965 - 28945820
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  28945965 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 28945866  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  28945865 agcaatccaacactggtgattcaaaagtttactagagagatagaag 28945820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 1368944 - 1369089
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  1368944 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 1369043  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  1369044 agcaatccaacactggtgattcaaaagtttactagagagatagaag 1369089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 36859372 - 36859260
Alignment:
Q  81 gacaacatgctagtatttgtggaattggtgaaacaaatctatttt-gaaatatgatttcaatgaccaagcaat---tcactggtaattcaaaagtttact 176  Q
    ||||||||| |  |||||||||||||||  ||||||||||||||| |||||| |||||||| |||| ||||||   ||||| ||||||||||||||||||    
T  36859372 gacaacatgttgatatttgtggaattggctaaacaaatctatttttgaaataggatttcaaagaccgagcaatccatcactagtaattcaaaagtttact 36859273  T
Q  177 agagagatagaag 189  Q
    ||||| |||||||    
T  36859272 agagaaatagaag 36859260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 11996332 - 11996187
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||| |||| ||| |||||    
T  11996332 agataatcctgctacttggcagactactttcatgacaacatgttggtatttgtggaattggcgaaacaaatctatttttgaaataggattccaaagacca 11996233  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||||||||||||||||||||||||||||||||    
T  11996232 agcaatccaacactggtaattcaaaagtttactagagagatagaag 11996187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 24127012 - 24126868
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  24127012 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaatatgatttcaaagacca 24126913  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaa 188  Q
     |||||    |||||||||||||||||||||||||||||||||||    
T  24126912 ggcaatccaacactggtaattcaaaagtttactagagagatagaa 24126868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 42865427 - 42865572
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| ||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  42865427 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatggaattggcgaaacaaatctatttttgaaataggatttcaaagacca 42865526  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  42865527 agcaatccaacactggtgattcaaaagtttactagagagatagaag 42865572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 6293526 - 6293671
Alignment:
Q  48 agataatactgatacttggcatacaactttcatgacaacatgctagtatttgtggaattggtgaaacaaatcta-ttttgaaatatgatttcaatgacca 146  Q
    ||||||| ||| ||||||||| || ||||||||||||||||| | |||||| || |||||| |||||||||||| |||||||||| |||||||| |||||    
T  6293526 agataatcctgctacttggcagactactttcatgacaacatgttggtatttatgtaattggcgaaacaaatctatttttgaaataggatttcaaagacca 6293625  T
Q  147 agcaat---tcactggtaattcaaaagtttactagagagatagaag 189  Q
    ||||||    ||||||| ||||||||||||||||||||||||||||    
T  6293626 agcaatccaacactggtgattcaaaagtttactagagagatagaag 6293671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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