View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0231-INSERTION-1 (Length: 492)
Name: NF0231-INSERTION-1
Description: NF0231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0231-INSERTION-1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 207 - 492
Target Start/End: Original strand, 6074206 - 6074491
Alignment:
| Q |
207 |
tttattttgacactattacttaaaaaataataagtagattaaattcatcaaaaacacgagagatgttatgcttaggaattaacacatggtggttgaattg |
306 |
Q |
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| T |
6074206 |
tttattttgacactattacttaaaaaataataagtagattaaattcatcaaaaacacgagagatattatgcttaggaattaacacatggtggttgaattg |
6074305 |
T |
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| Q |
307 |
aatatcttaaaaaattcatctaaaactggttacttacttgtgagtatgagtgtcccatccagatatagtggctgcttcagcaagggcagatctccactta |
406 |
Q |
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| T |
6074306 |
aatatcttaaaaaattcatctaaaactggttacttacttgtgagtatgagtgtcccatccagatatagtggctgcttcagtaagggcagatctccactta |
6074405 |
T |
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| Q |
407 |
agcactataagtttattggatgcattacttttggtcccaagatctctctcgtgttttgcaaatgctttctcataactgtgagtctg |
492 |
Q |
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| T |
6074406 |
agcactataagtttattggatgcattacttttggtcccaagatctctctcgtgttttgcaaatgctttctcataactatgagtctg |
6074491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 6074037 - 6074209
Alignment:
| Q |
7 |
agtattcaagaataaagtcgctccttttgccttcatatattagtagacattaagaacatgatgatgatgatatatataattcacttcctcttcnnnnnnn |
106 |
Q |
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| T |
6074037 |
agtattcaagaataaagtcgctccttttgccttcatatattagtagacattaagaacatgatgatgatgatatatataattcacttcctcttcttttttt |
6074136 |
T |
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| Q |
107 |
gattnnnnnnnnnntatactccactttttaacaaataattttctcagaactatatgaagagaaaagcttttta |
179 |
Q |
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| T |
6074137 |
gattaaaaaaaaaatatactccactttttaacaaataattttctcataactatatgaagagaaaagcttttta |
6074209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 6196860 - 6196938
Alignment:
| Q |
339 |
cttacttgtgagtatgagtgtcccatccagatatagtggctgcttcagcaagggcagatctccacttaagcactataag |
417 |
Q |
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| T |
6196860 |
cttacttgtgggtttgagtgtgccatccagatatagtggctgcttcagccaaggcaactttccagttaagcactttaag |
6196938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 6196943 - 6196990
Alignment:
| Q |
437 |
ttggtcccaagatctctctcgtgttttgcaaatgctttctcataactg |
484 |
Q |
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| T |
6196943 |
ttggtcccaagatctcgctcatgttttgcgaatgcattctcataactg |
6196990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 37450462 - 37450407
Alignment:
| Q |
357 |
tgtcccatccagatatagtggctgcttcagcaagggcagatctccacttaagcact |
412 |
Q |
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| T |
37450462 |
tgtcccatccagatatattggctgcttcagtaagggcagctttccatttaagcact |
37450407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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