View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0231_low_1 (Length: 444)
Name: NF0231_low_1
Description: NF0231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0231_low_1
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 30 - 416
Target Start/End: Original strand, 48753267 - 48753656
Alignment:
Q
30
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48753267
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc
48753366
T
Q
130
t---tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg
226
Q
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48753367
tgcttactatatgctcaaagaagatgaatctccgtgcatttttggtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg
48753466
T
Q
227
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatg
326
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
T
48753467
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcctagtgttgatg
48753566
T
Q
327
gtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagagccgttgaagcttgtggatggtggtgagt
416
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48753567
gtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagagccgttgaagcttgtggatggtggtgagt
48753656
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 416
Target Start/End: Original strand, 49051902 - 49052291
Alignment:
Q
30
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc
129
Q
||||||| ||| |||| || |||| || ||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
T
49051902
cagaaaataactagagactcattcatttttctacctgtgaggtttatgggaaaactattggtagttttctctctaaagatagtcctcttcgtcatgatcc
49052001
T
Q
130
t---tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg
226
Q
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||
T
49052002
tgcttactatatgctcaaagaagatgaatctccgtgcattttcggtccgatcgaaaagcaaagatggtcgtatgcatgtgcgaagcagttgattgaaagg
49052101
T
Q
227
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatg
326
Q
||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
T
49052102
ttgatttatggtgaaggtgatgaaaaggggttggagtttacaattgtgaggccttttaattggattgacccgagaatggatttcattcctggtgttgatg
49052201
T
Q
327
gtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagagccgttgaagcttgtggatggtggtgagt
416
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
T
49052202
gtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgtggagagccgttgaagcttgtagatggtggtgagt
49052291
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 32 - 396
Target Start/End: Complemental strand, 18136793 - 18136426
Alignment:
Q
32
gaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcct-
130
Q
||||| |||||||| || ||||| || ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
18136793
gaaaataacaagagactcgttcatttttctacatgtgaggttcatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcatgatcctg
18136694
T
Q
131
--tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggtt
228
Q
||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
T
18136693
cttactatatgctcaaagaagatgaatcttcgtgcatttttggttcgatcgaaaatcaatgatggtcatatgcatgtgcaaagcaattgattgagaggtt
18136594
T
Q
229
gatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggt
328
Q
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||| | |||||||||||
T
18136593
gatttatggtgaaggtgatgaaaatgggttggagtttacaattgtgagaccttttaattggattggaccaagaatggatctcgttcctagtgttgatggt
18136494
T
Q
329
ccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagagccgttgaa
396
Q
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
T
18136493
ccaagtgagagagttcctagggttcttgcttgcttcagcaacaatcttcttcgtggagagccgttgaa
18136426
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 15558602 - 15558391
Alignment:
Q
51
ttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc---ttactatatgctcaaaga
147
Q
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||| |
T
15558602
ttcacttctctacttgtgaagtatatgggaaaaccattggtagttttctccctaaagatagtcctattcgtcattatcctgtttactatatgcttaaa-a
15558504
T
Q
148
agatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgat
247
Q
||||||||| | |||||| || || | ||| |||||||||||||||| ||| ||||||| ||||| |||| ||||||||| ||||| || |||||||
T
15558503
agatgaatcaacatgcattctcggttcaatcaaaaagcaaagatggtcgtatacatgtgcaaagcagttgaatgagaggtttatttacggtgaaggtgcg
15558404
T
Q
248
gaaaatgggttgg
260
Q
|||||| ||||||
T
15558403
gaaaataggttgg
15558391
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 20490044 - 20489972
Alignment:
Q
51
ttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtca
123
Q
|||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
T
20490044
ttcatttctctacttgtgaagtgtatgggaaaactattggtagttatcttcctaaagatagtcctcttcgtca
20489972
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 20489287 - 20489181
Alignment:
Q
131
tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttga
230
Q
||||||||||| |||||||||| ||||| ||||||||| || | ||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||
T
20489287
tactatatgcttaaagaagatgtgtctccatgcattttcggttcaatcgaaaagcagagatggtcatatgcatgtgcaaagcagttgattgagaggctgg
20489188
T
Q
231
tttatgg
237
Q
|||||||
T
20489187
tttatgg
20489181
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 15538440 - 15538627
Alignment:
Q
80
aaaactattggtagttttctccctaaagatagtcctcttcgtcaagatccttactat--atgctcaaagaagatgaatctccgtgcattttcagtccgat
177
Q
||||||||||||||||||||||||||||||| |||||||| || |||||| ||| ||||| |||||| |||||||||| ||||||||| ||| |||
T
15538440
aaaactattggtagttttctccctaaagatattcctcttcagcatgatcctgcttatgtatgcttaaagaaaatgaatctccatgcattttcggtctgat
15538539
T
Q
178
cgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaattta
266
Q
| |||||| |||| ||| ||||||||||| | || |||||||| |||||| ||| || ||||||| ||||||| ||||||| ||||
T
15538540
cttaaagcagagatcgtcgtatgcatgtgcatatcagttgattgaagggttga-ttacggtgaaggtgttgaaaataggttggatttta
15538627
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 20489087 - 20488960
Alignment:
Q
242
ggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggag
341
Q
|||| |||||| || ||||| || ||||||||||| || ||||||||||| ||||| |||||||| ||||||| ||| |||| || ||||||||||| |
T
20489087
ggtgctgaaaacggcttggagttcacaattgtgaggccctttaattggatcggacctagaatggacttcattcccggtattgacggaccaagtgagggtg
20488988
T
Q
342
ttcctagggttcttgcttgcttcagcaa
369
Q
|||| | |||||||| |||||||||||
T
20488987
ttccccgtgttcttgcatgcttcagcaa
20488960
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 15565789 - 15565604
Alignment:
Q
75
atgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatc---cttactatatgctcaaagaagatgaatctccgtgcattttcag
171
Q
|||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |||||||| ||||||||| | |||||| |
T
15565789
atgggaaaactaccggtagttttctccctaaagatagtcctcttcagcatgatcctgcttagtatatgcttaaagaagatta----------attttcgg
15565700
T
Q
172
tccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac
267
Q
|| ||||| |||||| |||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| |||||
T
15565699
tctgatcgtaaagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac
15565604
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 15578436 - 15578251
Alignment:
Q
75
atgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatc---cttactatatgctcaaagaagatgaatctccgtgcattttcag
171
Q
|||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |||||||| ||||||||| | |||||| |
T
15578436
atgggaaaactaccggtagttttctccctaaagatagtcctcttcagcatgatcctgcttagtatatgcttaaagaagatta----------attttcgg
15578347
T
Q
172
tccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac
267
Q
|| ||||| |||||| |||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| |||||
T
15578346
tctgatcgtaaagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac
15578251
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 19389507 - 19389604
Alignment:
Q
269
attgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcag
366
Q
||||||||||||| ||| ||||||||||| |||||||| ||||||| ||| || |||||||||||||| || || || || ||| | |||||||||||
T
19389507
attgtgagaccttataactggattggaccaagaatggacttcattcctggagtggatggtccaagtgatggtgtcccaagagttttagcttgcttcag
19389604
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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