View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0234_low_2 (Length: 263)
Name: NF0234_low_2
Description: NF0234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0234_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 38739603 - 38739422
Alignment:
| Q |
43 |
tatcatctctttatccagctcatttagcttgagacctttctatcatgtatcatatctttatccaactcatattaatctttataccttttaatatttttta |
142 |
Q |
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| T |
38739603 |
tatcatatctttatccagctcgtttatcttcagatctttctatcatgtatcatatctttatcaaactcatattaatctttataccttttaatatttttta |
38739504 |
T |
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| Q |
143 |
tcagtctttctccacctgtagtgatttaatgaccctccatctgatctactctcatactacataatctacaagacttctctct |
224 |
Q |
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| T |
38739503 |
tcagtctttctccacctgtagtgatttaatgaccctccatctgatctactctcatactacataatctacaagacttctctct |
38739422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 30144898 - 30144834
Alignment:
| Q |
161 |
tagtgatttaatgaccctccatctgatctactc-tcatactacataatctacaagacttctctct |
224 |
Q |
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| T |
30144898 |
tagtgatttgaccaccctccatctgatctactcttcgtactatagaatctacaagtcttctctct |
30144834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 51009246 - 51009334
Alignment:
| Q |
137 |
tttttatcagtctttctccacctgtagtgatttaatgaccctccatctgatctactctca-tactacataatctacaagacttctctct |
224 |
Q |
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| T |
51009246 |
tttttctcggtcttcctccacgtctagtgatttaactaccctccatcttatcaactctcattactacataatctacaagaattctctct |
51009334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 28497597 - 28497548
Alignment:
| Q |
176 |
cctccatctgatctactctcat-actacataatctacaagacttctctct |
224 |
Q |
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| T |
28497597 |
cctccatctgatctactctccttactacataatctacaagtcttctctct |
28497548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 29520758 - 29520709
Alignment:
| Q |
176 |
cctccatctgatctactct-catactacataatctacaagacttctctct |
224 |
Q |
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| T |
29520758 |
cctccatctgatctactctccttactacaaaatctacaagtcttctctct |
29520709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 45331730 - 45331775
Alignment:
| Q |
164 |
tgatttaatgaccctccatctgatctactct-catactacataatc |
208 |
Q |
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| T |
45331730 |
tgatttgatgaccctccatctgatctactctccttactacataatc |
45331775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 6573417 - 6573469
Alignment:
| Q |
161 |
tagtgatttaatgaccctccatctgatctactctc-atactacataatctaca |
212 |
Q |
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|||||||||||| |||||||||||||| ||||||| ||||||| |||||||| |
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| T |
6573417 |
tagtgatttaattaccctccatctgatttactctctttactacaaaatctaca |
6573469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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