View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235-INSERTION-1 (Length: 705)
Name: NF0235-INSERTION-1
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235-INSERTION-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 98 - 705
Target Start/End: Complemental strand, 7309565 - 7308954
Alignment:
| Q |
98 |
cttggaagaatgagatatggaagaatgggcactggagcttcctctaattatgattccgagaactacatcaaaaaagtagaggaaccggatgttttaagga |
197 |
Q |
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| T |
7309565 |
cttggaagaatgagatatggaagaatgggcactggagcttcctctaattatgattccgagaactacatcaaaaaagtagaggaaccggatgttttaagga |
7309466 |
T |
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| Q |
198 |
aaagttcgatccctaatgcagcctccggtgttggccgcagtggtgatgttaagaaagggccgatgtttaaggatttagcagggaataggatggagaagat |
297 |
Q |
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| T |
7309465 |
aaagttcgatccctaatgcagcctccggtgttggcagcagtggtgatgttaagaaagggccgatgtttaaggatttagcagggaataggatggagaagat |
7309366 |
T |
|
| Q |
298 |
aaagaaggaattggaagtgcctcttaatttactgtgttaccctgagttgggtaaaaagttaggtttggaaccattgacgggaattttgctgcacggacca |
397 |
Q |
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| T |
7309365 |
aaagaaggaattggaagtgcctcttaatttactgtgttaccctgagttgggtaaaaagttaggtttggaaccattgacgggaattttgctgcacggacca |
7309266 |
T |
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| Q |
398 |
cctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactgatgttgtttctggtgtcactg |
497 |
Q |
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| T |
7309265 |
cctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactgatgttgtttctggtgtcactg |
7309166 |
T |
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| Q |
498 |
gtgagtatatgttattttgcttcaactttaattccattatttttgtgttaaa-ttttattaatattaagcataaggctgctaggtt---aggaggagaat |
593 |
Q |
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| T |
7309165 |
gtgagtatatgttattttgcttcaactttaattccattatctgtgtgttaaatttttattaatattaagcataaggctgctaggttataaggaggagaat |
7309066 |
T |
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| Q |
594 |
ttggattcctttctgttgctaaaatccagcattcacggactcatatgttggtgactgttggattaagatctaagaatgaagatttcaaacaaagttttta |
693 |
Q |
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| T |
7309065 |
ttggatttctttctgttgctaaaatccagcattcacgaactcatatgttggtgactgttggattaagatctaagaatgaagatttcaagcaaagttttta |
7308966 |
T |
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| Q |
694 |
tttgatttcctt |
705 |
Q |
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| T |
7308965 |
tttgatttcctt |
7308954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 7299524 - 7299415
Alignment:
| Q |
377 |
ggaattttgctgcacggaccacctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactg |
476 |
Q |
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||||||||| | || || ||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||| |||| ||||||||| | |||||||||| |
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| T |
7299524 |
ggaattttgttacatgggccatctggttgtggaaaaactatgcttgcttatgctattgctaatgaagctgaagttcccttttatcctgtctctgctactg |
7299425 |
T |
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| Q |
477 |
atgttgtttc |
486 |
Q |
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| T |
7299424 |
atgttgtttc |
7299415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 7309650 - 7309618
Alignment:
| Q |
7 |
aagaataagaaatgcttctcgaaacagacgtgc |
39 |
Q |
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| T |
7309650 |
aagaataagaaatgcttctcgaaatagacgtgc |
7309618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 380 - 493
Target Start/End: Original strand, 786541 - 786654
Alignment:
| Q |
380 |
attttgctgcacggaccacctggttgtgggaaaactagacttgctcatgctattgctaatgaaactgaacttcctttttatcctatttctgctactgatg |
479 |
Q |
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| T |
786541 |
attttgctgcatggaccacctggttgtggaaagactagacttgctcatgctattgctaacgagaccggtcttccttttcatcgtatttcggctaccgagg |
786640 |
T |
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| Q |
480 |
ttgtttctggtgtc |
493 |
Q |
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| T |
786641 |
tggtttctggtgtc |
786654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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